PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G062800.1.p
Common NamePRUPE_ppa001455mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 825aa    MW: 91102.3 Da    PI: 5.0914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G062800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047371394123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C++C+++F  k+++ +H+ + H
  Prupe.8G062800.1.p 371 FECHKCSMTFGEKDSYLQHLLSfH 394
                         89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.890.105.7E-4241294IPR001739Methyl-CpG DNA binding
SuperFamilySSF541712.62E-6244295IPR016177DNA-binding domain
PROSITE profilePS501578.767371399IPR007087Zinc finger, C2H2
SMARTSM003550.27371394IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280373394IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829418445IPR007087Zinc finger, C2H2
SMARTSM003550.2418440IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280420440IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MATVDSLIHI DITTLSQSEL HALSLCSSSS SAFNLFGAQD LVVPKIDRSV FNESAGSRRQ  60
TYSRPRRSQS DASTGHRRRV AGLHATPKLS PVPPDDPERN ENHAIIAHLK NFISQDPKFD  120
QIDFEATHTA SFPMLLGPNH ELRNGIVGFE GREDEGVKKR KRGRKPKVKV LSMEGEGYVG  180
MEMVNKNGAA VDVSGLANVE DPFGEELRRR TVGLETEEQL LGFMRELGGQ WGSRRKKRKI  240
VDANEFGDAL PVGWKLLLGL KRKEGRAWIY CRRFISPTGQ QFLSCKEVSS FLHSFFGFNN  300
ARQPDGHGGE NLQEECIMTT ENQHSDKDGG RRQYVNSSSA LVVSTISNER EKEVSLSGME  360
NLAEVQIHDL FECHKCSMTF GEKDSYLQHL LSFHQRTTRR YRLGSTVGDG VIIKDGKYEC  420
QFCHKVFLER RRYNGHVGIH VRNYVRRVEE SPGPTTVQKR IESPSGEGFP SRISKMDALI  480
EIAQNSILET STAGPNNESK CGPAANSHQE MNIDSPLSEP DLEGSMIGRT ASDQHDSEHT  540
ITDGSMEEAD DPMEVVDIKM DSGMNTTSIE KNGKPSESSL EKDGLVFTSD ELEKSSTNQD  600
GASQCLIHAS SNDKIISEVV GNENLNFTST LEHPNAVELS NNKNSEPAVE FGSSNDHGPA  660
DDTLIEPVRQ ANEENEMQSG ISDSLMSLVQ PLVCFPTSNA ISNKGEQHVS SVGQRHNHET  720
GFEELRLDEI EPLKYGFAGG QESLTMQEVP MDLTNNAEME RAFGSSVQFE QEEVMLSMAA  780
SHQLTCVWCG VEFNHEAADS EIQADSVGFM CPACKAKISG PLNV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.118223e-92shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G062800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199668.10.0uncharacterized protein LOC18766175 isoform X1
TrEMBLM5VIK50.0M5VIK5_PRUPE; Uncharacterized protein
STRINGEMJ008670.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719