PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G071200.1.p
Common NamePRUPE_ppa009401mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 295aa    MW: 31401 Da    PI: 5.2028
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G071200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.99e-16202238135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Prupe.8G071200.1.p 202 CMHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGV 238
                         99***99889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.0686499IPR010399Tify domain
SMARTSM009797.9E-136499IPR010399Tify domain
PfamPF062001.7E-126798IPR010399Tify domain
PROSITE profilePS5101713.245131173IPR010402CCT domain
PfamPF062033.0E-16131173IPR010402CCT domain
SMARTSM004013.8E-10196251IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-10199245No hitNo description
Gene3DG3DSA:3.30.50.101.6E-13200238IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.50E-12201238No hitNo description
PROSITE patternPS003440202229IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13202238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSESNHQNSM YGSGGAPQSN QVEEQEDDVE ESIDNPHIRF EDSSAIPPNP LYLTSSEYPP  60
AAATNGGSDQ LTLSFQGEVY VFDEVSPDKV QAVLLLLGGY EIPSGIPSMG PVPLNQQGMN  120
DLPVKPIQPQ RAASLSRFRE KRKERCFDKK IRYTVRKEVA LRMQRKKGQF TSSKASSDDG  180
GPASSGATQG SGQDESMQET SCMHCGISSK STPMMRRGPA GPRTLCNACG LKWANKGVLT  240
GGPKVSNIGM QDPSAKGIEQ GDGEAKDSVA ITMGANIAPS PNGDNSTMTV DRNL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.137021e-151fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G071200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200518.10.0GATA transcription factor 28
SwissprotQ8H1G05e-73GAT28_ARATH; GATA transcription factor 28
TrEMBLM5VKR30.0M5VKR3_PRUPE; Uncharacterized protein
STRINGEMJ017170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-68ZIM-LIKE 2