PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G071200.2.p
Common NamePRUPE_ppa009401mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 187aa    MW: 19829.5 Da    PI: 10.4047
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G071200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.5e-1694130135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg ++  Tp++Rrgp g++tLCnaCGl+++ kg+
  Prupe.8G071200.2.p  94 CMHCGISSksTPMMRRGPAGPRTLCNACGLKWANKGV 130
                         99***99889************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062031.4E-162365IPR010402CCT domain
PROSITE profilePS5101713.2452365IPR010402CCT domain
SMARTSM004013.8E-1088143IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-1191137No hitNo description
Gene3DG3DSA:3.30.50.107.9E-1492130IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.24E-1193130No hitNo description
PROSITE patternPS00344094121IPR000679Zinc finger, GATA-type
PfamPF003208.9E-1494130IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGPVPLNQQG MNDLPVKPIQ PQRAASLSRF REKRKERCFD KKIRYTVRKE VALRMQRKKG  60
QFTSSKASSD DGGPASSGAT QGSGQDESMQ ETSCMHCGIS SKSTPMMRRG PAGPRTLCNA  120
CGLKWANKGV LTGGPKVSNI GMQDPSAKGI EQGDGEAKDS VAITMGANIA PSPNGDNSTM  180
TVDRNL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G071200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200518.11e-135GATA transcription factor 28
SwissprotQ8H1G01e-51GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A251MWQ91e-134A0A251MWQ9_PRUPE; Uncharacterized protein
TrEMBLM5VKR31e-133M5VKR3_PRUPE; Uncharacterized protein
STRINGEMJ017171e-134(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-47ZIM-LIKE 2