PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G082800.1.p
Common NamePRUPE_ppa002335mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 687aa    MW: 76098.4 Da    PI: 6.3156
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G082800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-0691115526
                         --SGGGGTS...--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                         +C+  a+ G    C+y d+C+F+H+
  Prupe.8G082800.1.p  91 ICPEVAKRGdvsRCPYNDKCRFSHD 115
                         699999999999************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.03386117IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.427130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.8E-72330573IPR013785Aldolase-type TIM barrel
CDDcd028015.20E-91334569No hitNo description
SuperFamilySSF513952.77E-64334647No hitNo description
PfamPF012073.7E-52337591IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360418436IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDESPAETAP VPGVSNSWAD RTPEELVAKS IAPVKKQFLC PPPIRACSNE QNDDVSGGKT  60
KPAQTSVVKE KKSKRQLKRE RQQAVKSAVG ICPEVAKRGD VSRCPYNDKC RFSHDIEAYK  120
AQKPEDIEGD CPFMTAKETC PYGLACRFLG SHKDGVEAGD VSAHRRSSEM NGLSKDVQKL  180
LWKNKVKFPK ADAKLKALGL LGPANSKIKI LENKKDDQVV SNNCHVTDGN GCTEFPNNSD  240
DKMELAAEIR EENGVDETFS LDESRPSKKP RSEIEEEILS GEVDDGGANA TLEVVEPSCT  300
SPEPEATADI VSPESDRSLK LHPREKKLID FREKLYLAPL TTVGNLPFRR VCKGLGADIT  360
CGEMAMCTNL LQGQASEWAL LRRHSSEDLF GVQICGAYPD TVARTVELVN QECTVDFIDI  420
NMGCPIDIVV NKGAGSALLT KPMRMKGIVQ AASGTVDCPI TIKVRTAYFE GKNRIDSLIA  480
DMGNWGASAV TIHGRSRQQR YSKLADWEYV YQCARKAPDA LPVLGNGDIF SYLDWNKHQA  540
ECLELSTCMI ARGALVKPWI FTEIKEQRHW DISSGERLNI LKDYVRLGLE HWGSDTKGVE  600
TTRRFLLEWL SYTCRYVPVG LLEVIPQRLS WRPPAYFGRD DLETLMASDS AADWVRISEM  660
LLGKVPDGFT FAPKHKSNSY DRAENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A4e-2833157827266tRNA-dihydrouridine synthase B
6ei9_B4e-2833157827266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G082800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992550.0KM399255.1 Prunus persica FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007201200.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLM5VMI50.0M5VMI5_PRUPE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGEMJ023990.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108891212
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]