PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G085700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 1598aa    MW: 173888 Da    PI: 4.607
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G085700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.3e-0615731595326
                          S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    3 telCrffartGtCkyGdrCkFaHg 26  
                          ++ Cr f+++G+Ck G++C + H+
  Prupe.8G085700.1.p 1573 QRVCR-FFESGHCKKGASCDYLHP 1595
                          68899.8889*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.75E-9322378IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.0E-9327386IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.831331397IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-8333379IPR001965Zinc finger, PHD-type
CDDcd155681.35E-21333378No hitNo description
PROSITE patternPS013590334394IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.104.5E-27543636IPR003121SWIB/MDM2 domain
SuperFamilySSF475928.28E-21547628IPR003121SWIB/MDM2 domain
SMARTSM001510.0011554632IPR019835SWIB domain
PfamPF022012.9E-15554627IPR003121SWIB/MDM2 domain
SMARTSM007191.1E-47688798IPR004343Plus-3 domain
PROSITE profilePS5136026.42688821IPR004343Plus-3 domain
SuperFamilySSF1590427.06E-33689818IPR004343Plus-3 domain
PfamPF031263.5E-22693796IPR004343Plus-3 domain
SuperFamilySSF552773.14E-1810261089IPR003169GYF domain
CDDcd000721.02E-1610361091No hitNo description
PROSITE profilePS5082916.6210361090IPR003169GYF domain
SMARTSM004444.4E-2110371092IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.0E-1810381090IPR003169GYF domain
PfamPF022133.6E-1510381082IPR003169GYF domain
SMARTSM003564.1E-515701596IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.29115701597IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-515721595IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-415741595IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1598 aa     Download sequence    Send to blast
MEAEEEDVLK VNEPSVPVQN DAVLSPETQE ELRRTEAQCM SESLPEPELK PETEGFGQGV  60
EGESDAVPTE DTEIVEELNV AEGYGTEDTE IVEELNVAEG HGTEDTEIVE ELNVAEGYGT  120
EDTEIVEELN VAEGHGTEDT EIVEELSVAE GQVTEETEVG AVDEKGLETE KVLSEEGVVA  180
HSAKEAAEKS NVAEVAEETV ISWKDQAEEK TAEVEAEEAE AEAEKVQAVG EQAEAEGEKT  240
EAEVEGDDEA NVTDMVAETD MVEEVDMADD AMEETTEAEE TEAAEEEAEG MEVEEEEEDE  300
ETNRAGSGGK RKRGKSSKAT GKLLSKKKME EDVCFICFDG GELVLCDRRG CPKAYHPSCV  360
NRDEAFFRAK GRWNCGWHLC SNCEKNAHYM CYTCTFSLCK GCTKDAVFLC VRGNKGFCET  420
CMKTVMLIEK NEQGNKDTNE VDFDDKTSWE YLFKDYWIDL KERLSLTVDE LAQAKNPWKG  480
ATGHKQESHD EPYDVNNDEG SESDNSENLD LANSKKRKAK KRLRSRGKGK DSSSPATATG  540
SGRPSADDST GWGSKELLEF VMHMRNGDRS ALSQFDVQAL LLEYIKRNKL RDPRRKSQII  600
CDIRLQNLFG KPRVGHFEML KLLESHFLVK EDSQADDLQG SVVDTEGNQL EADGNSDTPA  660
KSGKDKRRKT RKKGDGRGPQ SNIDDFAAID IHNINLIYLK RNLVEDLLDD LDNFGDKVAH  720
SFVRIRISGS GQKQDLYRLV QVIGTCKAAE PYKVGKRMTD ILLEILNLNK TEIISIDIIS  780
NQDFTEDECK RLRQSIKCGL INRLTVGDVQ EKALALQAVR VKDWLETEIV RLSHLRDRAS  840
EKGRRKELRE CVEKLQLLKT PEERQRRLEE TLEIHVDPNM DPSYESEEDE DEGDDKKQES  900
YIRPTGSGFG RKGREPISPR RAGPSSNDSW SGTRNFSSMN RELSRNMSNK GFFNKAENTT  960
AAGEIVNDSW GHGRDRETQQ TNHWEKKQNI SSLETGVRST QSAVPSESSP AGGSENSVVH  1020
LSTGVAQSAA NINESEKIWH YKDPSGKVQG PFSMVQLRKW NHTGYFPANL RVWKNTEKEE  1080
DSILVTDALA GKFQKDPSFV DSSFPKAQMV HNSHLSPVHS GKSQGALFQR GTEGQAGGVS  1140
WGSQNEINSS SGRGTPQSVE VPKYSSDGWS TTNLPSPTPS QTPLGGARGQ AYESNWSPSP  1200
ARPGGSVLGG NGVLQPTAVV TPESALRASG NDRSSSLPGI NAAPKSENAT LLGSTTALRM  1260
HGQVTGSAPV LSNASMNQVA DVNNLVSNLQ NLVQSVTSRA PASDARGWGS GSVPNQEMTA  1320
SGPVPGSESQ PWGGAPSQRI EPNNAATVPA QHHTHGYWNN APSTNNAPSS MNTGNLAGNF  1380
PTSGFSGVPH SDPWRPPVPS NHTYIQPPAQ PQAPWGVGVP DSQSAVPRTG QENQNTSWVP  1440
MAGNPNVTWG GPVPGNTNMN WGPPSQGPGW TAPSQGPVPG NAVTNWVPPG QGPPSVSANP  1500
GWAPPGQGPT LGNANPGWSA PNATQNGDRF SNQRDRGSHG DPGFSGGKPW NRQSSFGGGG  1560
GGGGSSRPPF RGQRVCRFFE SGHCKKGASC DYLHPDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A8e-193274071188Histone-lysine N-methyltransferase NSD3
4gnd_C8e-193274071188Histone-lysine N-methyltransferase NSD3
4gne_A8e-193274071188Histone-lysine N-methyltransferase NSD3
4gnf_A8e-193274071188Histone-lysine N-methyltransferase NSD3
4gng_A8e-193274071188Histone-lysine N-methyltransferase NSD3
4gng_D8e-193274071188Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G085700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020409470.10.0zinc finger CCCH domain-containing protein 19
TrEMBLA0A251MV390.0A0A251MV39_PRUPE; Uncharacterized protein
STRINGXP_008236851.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding