PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.8G087900.1.p

Common Name

PRUPE_ppa026391mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

DBB

Protein Properties

Length: 209aa MW: 23014.8 Da PI: 7.0625

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G087900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.4e-08	3	43	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 +C+ +e++e++ fC ++ lC+ C H + H+ Prupe.8G087900.1.p 3 IRCDVCEKEEATVFCSADEAALCDVCDRRVH-YanklagkHK 43 58*************************9999.4355666665 PP
2	zf-B_box	25	3.8e-08	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e + lfC++++ lC++C +++Hk Ht Prupe.8G087900.1.p 55 SPLCDICQERRGFLFCQQDRAILCRECDFSIHKTneHT 92 689*****9*******************888865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.381	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.8E-6	3	43	IPR000315	B-box-type zinc finger
CDD	cd00021	1.65E-6	3	47	No hit	No description
SMART	SM00336	2.9E-8	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.025	53	100	IPR000315	B-box-type zinc finger
SMART	SM00336	1.7E-12	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.8E-6	55	92	IPR000315	B-box-type zinc finger
CDD	cd00021	1.56E-8	56	87	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MKIRCDVCEK EEATVFCSAD EAALCDVCDR RVHYANKLAG KHKRFCLLHP TFKDSPLCDI 60 CQERRGFLFC QQDRAILCRE CDFSIHKTNE HTQKHNRFVL PGVKLSAAAS LYPTSSSSCS 120 GFSQLANTTD ARASKSSSKR PKTVSDKALN CSPSVEQTTS SSSYKTGENC GSDNGSVSTS 180 SISEYLMETL PGWHVEDFFD FSFAPDGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.4943	8e-93	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G087900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007200846.1	1e-154	B-box zinc finger protein 20
Swissprot	Q9LQZ7	4e-68	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	M5W5I1	1e-152	M5W5I1_PRUPE; Uncharacterized protein
STRING	EMJ02045	1e-153	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	4e-68	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Prupe.8G087900.1.p
Entrez Gene	18768760

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]