PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G132600.1.p
Common NamePRUPE_ppa020124mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 230aa    MW: 26346.3 Da    PI: 9.1291
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G132600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.5e-11123191273
                         EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                         f+v +++++l++g+l++p  f ++h ++++++    +l+ ++g +W+vk++y+k + +  +++GW+ Fv+ n+
  Prupe.8G132600.1.p 123 FTVVMHPSYLQKGLLTVPVGFGKRHlMKQPAG--NAILKVLDGGTWSVKFTYSKPKAQ--FQQGWRAFVRGNN 191
                         46788999999**************7666666..59999999********77666655..9********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-13116191IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-14116191IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-12121191No hitNo description
PROSITE profilePS508638.713122215IPR003340B3 DNA binding domain
PfamPF023629.5E-9123191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKFVMKHGEH LLTPVHLKLP SGVEWEIEFR RCNNDGVWFK TRKRYRGRIT KPEIEETDYE  60
EEDDDNSVKI LDGFQPCPRK AREKSPLPCP QPHKKMRICK QGLRLLQIRN EKAIAFESAS  120
PSFTVVMHPS YLQKGLLTVP VGFGKRHLMK QPAGNAILKV LDGGTWSVKF TYSKPKAQFQ  180
QGWRAFVRGN NSSDDYDLFI NVDYGLFISD LEQSEALVLS EFSNIISEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G132600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505416.13e-41PREDICTED: uncharacterized protein LOC108867956
RefseqXP_020423288.13e-41B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_020423289.12e-41B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A251MXD31e-171A0A251MXD3_PRUPE; Uncharacterized protein
STRINGEMJ003841e-172(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-09B3 family protein