PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G158400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 376aa    MW: 39948 Da    PI: 4.7133
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G158400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.62.2e-20243445
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        en++n qvtfskRr+g++KKA+ELS+LC++e  +i+fs+  k
  Prupe.8G158400.1.p  2 ENETNLQVTFSKRRAGLFKKASELSTLCGTELGLIVFSPGKK 43
                        8*************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.423151IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-20150IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-22173IPR002100Transcription factor, MADS-box
PfamPF003197.7E-22247IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-81328IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-82849IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MENETNLQVT FSKRRAGLFK KASELSTLCG TELGLIVFSP GKKAFCFGHP SIEEVLDKYE  60
GRPSRQPLNH DMQQIVEACS HTTLNELNAE LTQVMERIEG ERKRGEELTQ LLKASQAECG  120
LQGPVEELDL DTMEILRASL MQLRSKVADQ AKQKLAAAKT ANPPHNPNVY VGSSSSSAAA  180
QSANPAQNNY FVGSSSSSAA AQSANPAHNN YFVGRSSSSA AAQSANPAHN NFFVGSSSSS  240
AAAGPSGLQG LANPEINNVG FNFNGNDFVM QAPDQPNNFG FNFNGAEPVL QAPDQPNNLG  300
FNFNGAGPVM QAPPDQPNNL GFNFNGPDHP NNLGFNFNGA ESIMQAPPDQ PNNVGFNGDP  360
MFLSDWNPNL GGGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G158400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236215.10.0PREDICTED: MADS-box transcription factor 29-like
TrEMBLA0A251N0P30.0A0A251N0P3_PRUPE; Uncharacterized protein
STRINGXP_008236215.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3986822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-33AGAMOUS-like 62