PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.8G188500.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 204aa MW: 23386.6 Da PI: 5.2262

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G188500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.2e-27	36	124	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+eYA++vGF +r+++ ++s+ +++i +r++ C+k+g+ + +++ + rr+r++tr gCka++ vk +k+gkw+vt+++++H+H+l Prupe.8G188500.1.p 36 DFYSEYARHVGFIMRIDQCRRSDVDKRILSRRLSCNKQGRYVKPRDQVRPVRRPRPSTREGCKAMMLVKVNKSGKWVVTRVVKDHTHPL 124 6*************************************999999999************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-24	36	125	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MNVAAGAPET SAERDLNAVA EPYVGMEFDS EDAAKDFYSE YARHVGFIMR IDQCRRSDVD 60 KRILSRRLSC NKQGRYVKPR DQVRPVRRPR PSTREGCKAM MLVKVNKSGK WVVTRVVKDH 120 THPLIVSSGI SMDERDMKIE QLTMELERED QLCELYHGLL LTLLDNVEEQ TELISMKVSG 180 VVNDVREFET EVERLPQNEL DDN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G188500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007199499.2	1e-145	protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A251N012	1e-148	A0A251N012_PRUPE; Uncharacterized protein
STRING	XP_008235883.1	1e-143	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	4e-50	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.8G188500.1.p