PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G228000.1.p
Common NamePRUPE_ppb024794mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 205aa    MW: 22756.6 Da    PI: 8.383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G228000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000212345123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ C++ F++   L  H+++H
  Prupe.8G228000.1.p 23 YACSFCKREFRSAQALGGHMNVH 45
                        89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-62049No hitNo description
Gene3DG3DSA:3.30.160.604.0E-42148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-62346IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1982350IPR007087Zinc finger, C2H2
SMARTSM003550.00922345IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDCINFSFEG ENLCDISWAA KNYACSFCKR EFRSAQALGG HMNVHRRDRA RLRLLPPSLS  60
SEICPHNPNP SSYFSPSSSS SSSSLSSSKG LPHNYSSCHS LLSPSLRALM SATSSTDGNK  120
KPKFKYNSPQ NHVPNLIPKK GKRGAVDHEA GEILKGFAQK DLDDEFNKVD DLKKESNIIR  180
LDLDMGFFKD HKEEVDLELR LGHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G228000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200930.11e-149transcriptional regulator SUPERMAN
TrEMBLM5VLU71e-147M5VLU7_PRUPE; Uncharacterized protein
STRINGEMJ021291e-148(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1696368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-14zinc finger protein 11