PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G242100.2.p
Common NamePRUPE_ppa002884m2g
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 412aa    MW: 46286.3 Da    PI: 7.0398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G242100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.6e-15183230355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++h ++ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Prupe.8G242100.2.p 183 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 230
                         5899***********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.638180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-19182244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-12183229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-14184234No hitNo description
Gene3DG3DSA:4.10.280.109.0E-20184247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-18186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MQLEMSEDIR LGSPDDASNN LDSDFHLLAV SQSRVNPADQ QRQADSYRAE STRRWPSVQE  60
PLSSGLQPPP QGPLALEELT HDDTHYSETV STILQRQATR WTDSSSTDQV AYSAQSAFIK  120
WTTRVEHHML VPIEGTSQWL LKYILFSVPF LHTKYRDENS PKSHEGDAST RLRKGTPQDE  180
LSANHVMAER RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR KKIQDLEARN  240
VQMEDDQRSR SSGEIHRSNS MKELRSGLTV VERTRVGPPG SDKRKLRIVE GSGGAAVAKP  300
KMMEESPPSP PPPPPQSSPT PMVTGTSLEV SIIESDGLLE LQCPYREGLL LDIMQTLREL  360
RIETTVVQSS LNNGFFVAEL RAKVKENVNG KKISITEVKR VINQIIPQSD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-16184245869Transcription factor MYC2
5gnj_B5e-16184245869Transcription factor MYC2
5gnj_E5e-16184245869Transcription factor MYC2
5gnj_F5e-16184245869Transcription factor MYC2
5gnj_G5e-16184245869Transcription factor MYC2
5gnj_I5e-16184245869Transcription factor MYC2
5gnj_M5e-16184245869Transcription factor MYC2
5gnj_N5e-16184245869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193ERRRRE
2189194RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.75320.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G242100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4647550.0KJ464755.1 Prunus persica cultivar Stark Red Gold bHLH3 (bHLH3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200710.20.0basic helix-loop-helix protein A
SwissprotE3SXU41e-143BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A251N4U60.0A0A251N4U6_PRUPE; Uncharacterized protein
TrEMBLM5W5440.0M5W544_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ019100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-33bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]