PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.8G243500.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 325aa MW: 36452 Da PI: 4.439

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G243500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.9	2.4e-05	205	248	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r RR ri ++++ LrellP + + a ++ ++++Ik Lq Prupe.8G243500.1.p 205 VTDRTRRMRIAERLDALRELLPIS-----TEGGQAFVVDDVIDHIKFLQ 248 678*******************97.....34445666666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.614	198	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-8	204	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-5	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.28E-5	208	252	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEGQSSLTDP MQLVPLDFCG DAAIDVSQAT GDDPSQQVIM AAEGTAYQTD DLFSPWWTEK 60 PKPSLDSLNY VEFQAESSTF LPKDRSEDIL ESIPLSVSGI DDVGGVSEFQ REVLYSSLRN 120 ACGSKLTDFS MDMDEWKQVR CLRPVNDELV NAQHQLHAKY HTSRTDNLCG DKKDSVSQVD 180 PRARSALPDF HSQPHCHIST QRAAVTDRTR RMRIAERLDA LRELLPISTE GGQAFVVDDV 240 IDHIKFLQLQ IKDLCRSRLG GETITEPIIF REGYGHYFCH QNMLNEPLEE MMGKLLETNP 300 MAASQLLENK DLLLLPMDYS EPLA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G243500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020426378.1	0.0	uncharacterized protein LOC109950749 isoform X1
Refseq	XP_020426379.1	0.0	uncharacterized protein LOC109950749 isoform X1
Refseq	XP_020426380.1	0.0	uncharacterized protein LOC109950749 isoform X1
Refseq	XP_020426382.1	0.0	uncharacterized protein LOC109950749 isoform X3
TrEMBL	A0A251N2R7	0.0	A0A251N2R7_PRUPE; Uncharacterized protein
STRING	XP_008355451.1	1e-125	(Malus domestica)
STRING	XP_008368858.1	1e-125	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-18	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Prupe.8G243500.1.p