PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G252300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 719aa    MW: 79237.5 Da    PI: 6.1443
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G252300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.82.7e-25161262199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+ltpsd++++g +++pk+ a+e+       ++++   ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv a++L +gD ++F  
  Prupe.8G252300.1.p 161 FSKTLTPSDTSTHGGFSVPKRQADEClppldmsQQPP--VQELVARDLQGFEWHFRHIFRGQPKRHLLTSGWSTFVTAKRLVAGDACIFV- 248
                         88*****************************744444..458************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++el+v+++r+
  Prupe.8G252300.1.p 249 -RGENGELRVGIRRA 262
                         .449999******97 PP
2Auxin_resp98.59.6e-33287369183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a ha st++ F+v+Y+P++s++ F++++++++k+ k+  s+GmRf+  fe+++++e+rl+Gt++g++d d +rWp S+Wr+Lk
  Prupe.8G252300.1.p 287 AFHANSTGTLFTVYYRPWTSPAAFIIPYDRYMKSAKNDHSIGMRFRTCFEGDECAEKRLAGTIIGIEDNDCIRWPSSEWRCLK 369
                         67999****************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-36152287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40155273IPR015300DNA-binding pseudobarrel domain
CDDcd100177.54E-24159261No hitNo description
PROSITE profilePS5086313.239161263IPR003340B3 DNA binding domain
PfamPF023622.1E-22161262IPR003340B3 DNA binding domain
SMARTSM010197.9E-25161263IPR003340B3 DNA binding domain
PfamPF065077.7E-30287369IPR010525Auxin response factor
PfamPF023093.8E-10615703IPR033389AUX/IAA domain
SuperFamilySSF542772.31E-9618697No hitNo description
PROSITE profilePS5174520.69620702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MAPRTTAGVE GLGPTTVNIA ERESSGCSDG SAFPVDAAAA AAAANKNKRG EKDDSYTRLW  60
HACAGPNVYV PGPGEKVFYF PQGHMEQVEA YANEDGKMEM PIYNLPSKIL CNVVCVLLKA  120
EVHTDEVFAQ ITLLPLTEQE QLSLDEENNQ PVPQSTSTRS FSKTLTPSDT STHGGFSVPK  180
RQADECLPPL DMSQQPPVQE LVARDLQGFE WHFRHIFRGQ PKRHLLTSGW STFVTAKRLV  240
AGDACIFVRG ENGELRVGIR RANKNQDNAS TALISGHSMQ HGILASAFHA NSTGTLFTVY  300
YRPWTSPAAF IIPYDRYMKS AKNDHSIGMR FRTCFEGDEC AEKRLAGTII GIEDNDCIRW  360
PSSEWRCLKV QWDASSDTNL HPERLSPWNI MPLQPNKRAH VPDLISPGFP NLATNGLLPI  420
PVEYTPPRQK KVFQGQEISD PPAHEPGTQK PPLLPQFIPP SNPDWTHTEL GLDNNPLHDP  480
LYQCPGSAIA PSLTNRWPPI FNFGVWDSVA FRRSMSVPNI KSSGSQDSRA FKPRSEIEAP  540
LVQPNSRGTT MLFGVNIVTS HPELPSPQVV TSSELFSPCS ITPISQSSVS ETVQISETSK  600
IVSGVLSAKQ CKKCCSVTNR SCIKVLKYGA PVGRSVDLAR FDGYGELISE LDQMFDFKGS  660
LIDGSSGWQV TYMDDEGDMM LIGDYLWHEF QSMVQKLFIC PKEEIDRLNP GSPNATSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-137393932355Auxin response factor 1
4ldw_A1e-137393932355Auxin response factor 1
4ldw_B1e-137393932355Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G252300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1853060.0KP185306.1 Prunus mume cultivar Daqiandi auxin response factor 11 (ARF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020426111.10.0auxin response factor 2
RefseqXP_020426112.10.0auxin response factor 2
TrEMBLA0A251N6C30.0A0A251N6C3_PRUPE; Auxin response factor
STRINGXP_008234982.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.21e-166auxin response factor 1