PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G254900.1.p
Common NamePRUPE_ppa005229mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 472aa    MW: 50497.9 Da    PI: 8.919
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G254900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-114571127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ ++C +++rtG+C yG rC+++H++
  Prupe.8G254900.1.p 45 PGVPNCVYYMRTGFCGYGIRCRYNHPR 71
                        5789*********************96 PP
2zf-CCCH40.93.4e-1392116327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Prupe.8G254900.1.p  92 EPICQYYLKTGTCKFGASCKFHHPK 116
                         799********************96 PP
3zf-CCCH36.48.9e-12137162227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ +C+++++tG+Ck+G +CkF+H++
  Prupe.8G254900.1.p 137 GENECSYYLKTGQCKFGITCKFHHPQ 162
                         6789********************97 PP
4zf-CCCH36.96.1e-12292318127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+++++tG CkyG++C+++H++
  Prupe.8G254900.1.p 292 PGEPECQYYLKTGDCKYGPSCRYHHPR 318
                         5799*********************96 PP
5zf-CCCH35.51.7e-11339363226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +  +C f++++G+Ck+G++CkF H+
  Prupe.8G254900.1.p 339 GVQPCTFYLQNGHCKFGSTCKFDHP 363
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3384472IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-64471IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-45071IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-789116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.86389117IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-692116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-594116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342135163IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5135162IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-9137162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4141161IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.845291319IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6295320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5297318IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666337365IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6339368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5341363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MELYGRNPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGIRCRYNHP RDRAAVVAAV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG  120
SLSRAPLNIY GLPLRPGENE CSYYLKTGQC KFGITCKFHH PQPAGTTIPA SAPQFYPSVQ  180
SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGAYGPVLIP PGVVPIQGWS YSAPLSPVLS  240
PGAQPTVGAT SLYGVTQLSS PTHGLARPYT SVPSAVGPSS SSPSEQVFPE RPGEPECQYY  300
LKTGDCKYGP SCRYHHPRDR VIPRTNCLLS PIGLPLRPGV QPCTFYLQNG HCKFGSTCKF  360
DHPIGTMRYN PSASSLVDMP VTPYPVGSLL ATLAPSSSST DLRPELISTS KKDTYSTRVP  420
SSGNTSSSSV GLIFSQSGSV SLSDVQHTSQ TSVPLSSSRS TRQGGEVRRS S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G254900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200997.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM5VMU10.0M5VMU1_PRUPE; Uncharacterized protein
STRINGEMJ021960.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein