PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G255800.1.p
Common NamePRUPE_ppa023775mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 604aa    MW: 65916 Da    PI: 8.4498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G255800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-0596118123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Prupe.8G255800.1.p  96 FVCEICNKGFQRDQNLQLHRRGH 118
                         89*******************88 PP
2zf-C2H215.35.7e-05172194123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H++t+
  Prupe.8G255800.1.p 172 WKCDKCSKKYAVQSDWKAHQKTC 194
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.1E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.35E-895118No hitNo description
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM0035598137167IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-5160193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.35E-8167193No hitNo description
SMARTSM0035594172192IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MSNITGDVEE GSFSSGNNTG ELEVHQENQQ QNHLQGSGSG GPSGAQSNSN GSVTQQQHQQ  60
QQQPPLKKKR NLPGTPDPSA EVIALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLRQRTTT EVRKRVYICP EPTCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK  180
YAVQSDWKAH QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALAEENNKV NHGLMTSQTQ  240
MPLPHDQLIS SMAMNTNSSM GGGSDVLNYD ISNKNSLNKS FPDDLVPMPF KSMNMNIMAG  300
GGVGGPGMFS STSGSLFGGP RSVSSASASS LQLSSNNNNN NSSSGFNYLH HQETKNGGST  360
QSNITGAAQM SATALLQKAA QMGATASNST INSPMMQKSF VSGMAGPDQL SVNPISVNNN  420
NNNNNNIRPP SSYDDHHHQF QQQQPPDHHQ PHNSHNMVVG GFTNQLMQKG GPQEMSQLFD  480
HHTNSAASSA MTDMGLFNQV FMGIGGDPHH HHEISAANNN SSPNSIHGIR INAMERGAMG  540
PSTTLDLLGI GGSRPPNLHE HHQQQQRLDL EAMSQHRLPA IMNPFQQQRS HGDSSMEKQI  600
WDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34168231366Zinc finger protein JACKDAW
5b3h_F3e-34168231366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G255800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020426272.10.0protein indeterminate-domain 2
SwissprotQ9SCQ61e-114IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A251N5H50.0A0A251N5H5_PRUPE; Uncharacterized protein
STRINGXP_008235084.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]