PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000229
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 554aa    MW: 61046 Da    PI: 9.1297
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38830946PU_unrefUnigeneView CDS
gnl|UG|Psi#S50072902PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-29509PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.9e-1079103226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C++++rtG+C yG +C+F+H+
  Psi000229  79 GQADCSHYMRTGYCGYGMNCRFNHP 103
                7899********************9 PP
2zf-CCCH34.24.4e-11125147527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 C+f+++tGtCk+G++Ck++H++
  Psi000229 125 ACQFYMKTGTCKFGATCKYHHPR 147
                7********************96 PP
3zf-CCCH35.71.5e-11168192327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++ rtG+CkyG++Ck+ H++
  Psi000229 168 EKECTYYIRTGYCKYGASCKYDHPQ 192
                689********************97 PP
4zf-CCCH23.59.5e-08341366126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +++++C+++ +tG Ck+G  C+++H+
  Psi000229 341 PGQPECQYYIKTGDCKFGFACRYHHP 366
                5789*********************8 PP
5zf-CCCH28.23.2e-09389413327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +++ +G+Ck+G++CkF H++
  Psi000229 389 QPTCTYYSHYGICKFGPTCKFDHPM 413
                689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.52677105IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-577104IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-878103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-678105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-483102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948120148IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-6122150IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8124147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4126148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6164193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915165193IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4167192IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8168192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5171190IPR000571Zinc finger, CCCH-type
SMARTSM003560.018340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155340368IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4342366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5384412IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033386414IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4386413IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6389413IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MIDGIYRASV PQQRPASGAR GHRVTDVRAD NWLPYHAGLN STKSAAESMK ESMRRMTLQP  60
QDSRSRMNGY SESYPERFGQ ADCSHYMRTG YCGYGMNCRF NHPTNMKLQA ARNKGELPER  120
VGHNACQFYM KTGTCKFGAT CKYHHPRDRL GAGQVQLNMI GLPMRMGEKE CTYYIRTGYC  180
KYGASCKYDH PQPAALGTLV PVSGSPLYAT IRPPIAPASA TQYSPGLPTW PSPRTPYRQS  240
PHMPGALPYM PVMYSPHQGM LAASGWGTYQ SPASPLTSPE SQQQLRRMNI MYNSTQPNGL  300
SVGGVQGLIT PFAQGSSAAV GHQPGHFQPN RTQTETYPER PGQPECQYYI KTGDCKFGFA  360
CRYHHPHERV SQSSTCVLSP IGLPLRPTQP TCTYYSHYGI CKFGPTCKFD HPMAGLSCSP  420
SASSLSEIPV APYPRGSSPT TTHVQSPSEP PQEIAKSRDQ PLREPTSSKQ DPETVVSGNT  480
RENVSTYSDA AIVSRSAQSA LCKCSWSMAW FLKIRTGASS SRHNIVCKAE FLEVPKICKN  540
VENSSISFFC SYPG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.206840.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMQ00.0B8LMQ0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-97C3H family protein