PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000601
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 20433.5 Da    PI: 7.2591
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50072745PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-4489PU_unrefplantGDBView CDS
PUT-183a-Picea_sitchensis-4490PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               kri n s rqvtfskRr g++KKA+ELS+LC+a+va+++fsstgkly+yss
  Psi000601  9 KRIANASARQVTFSKRRRGLFKKAQELSILCEADVALVVFSSTGKLYDYSS 59
               79***********************************************96 PP
2K-box42.43e-15921642298
      K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +++k++ e   +     l e+Le L+lk+L++Le+q e  l+ iRs+K e+l+++i+elq+k  ++ een++Lr ++
  Psi000601  92 KRIKQQFEDASQD----LREELEGLTLKDLEKLEEQFEMELSCIRSQKVEHLVKKINELQQKVIQMIEENTKLRGQV 164
                5566666655555....449*****************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.815161IPR002100Transcription factor, MADS-box
CDDcd002656.72E-37269No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-30374IPR002100Transcription factor, MADS-box
PfamPF003192.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.66374170IPR002487Transcription factor, K-box
PfamPF014862.8E-1187164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAREKIEIKR IANASARQVT FSKRRRGLFK KAQELSILCE ADVALVVFSS TGKLYDYSSS  60
SMEVILDKYV LYPSTIQKDG QQILEFEGQD PKRIKQQFED ASQDLREELE GLTLKDLEKL  120
EEQFEMELSC IRSQKVEHLV KKINELQQKV IQMIEENTKL RGQVYSYSRG SLLFTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21172172MEF2C
5f28_B5e-21172172MEF2C
5f28_C5e-21172172MEF2C
5f28_D5e-21172172MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926365.12e-53MADS-box protein JOINTLESS isoform X1
RefseqXP_010926366.12e-53MADS-box protein JOINTLESS isoform X1
RefseqXP_019707170.12e-53MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY67e-50JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLB8LN411e-123B8LN41_PICSI; Uncharacterized protein
STRINGVIT_00s0313g00070.t011e-50(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]