PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000808
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family AP2
Protein Properties Length: 706aa    MW: 77234.5 Da    PI: 6.4004
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073249PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-16076PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17252301155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Psi000808 252 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 301
                78*******************......55************************998 PP
2AP241.24.1e-13344394155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Psi000808 344 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEIEAARAYDQAAIKCNG 394
                89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-16252310IPR016177DNA-binding domain
PfamPF008476.0E-9252301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17253310IPR001471AP2/ERF domain
CDDcd000182.37E-11253311No hitNo description
SMARTSM003807.2E-33253315IPR001471AP2/ERF domain
PROSITE profilePS5103217.873253309IPR001471AP2/ERF domain
CDDcd000184.97E-24344404No hitNo description
SuperFamilySSF541711.9E-16344404IPR016177DNA-binding domain
PfamPF008471.4E-8344394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-15345402IPR001471AP2/ERF domain
SMARTSM003801.0E-30345408IPR001471AP2/ERF domain
PROSITE profilePS5103215.079345402IPR001471AP2/ERF domain
PRINTSPR003671.2E-5346357IPR001471AP2/ERF domain
PRINTSPR003671.2E-5384404IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSTCEAPAEI STEWDLNLTP AAPDEYVLAV NSTNPNFLRE PHEVNALSSK AEESGSVCDE  60
TSINPAIAVA KSELEPWTSG TGELSFIRRA ENCRDDSGTS NSSVVNAPVI DNRIKNDGSL  120
YLECEDSANQ AIESRSRSND INNLGQSKTV SSKLFGCFMT VNALAGSEMN THSQGQPDTC  180
ITHQFSVVNR ALDSVSSPPL EEIRGPVNQF SRSLWGDHLA SSQTDSSGTP NPPTVPIQAA  240
KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR  300
GQDADINFNL SDYEEDLKQL NNLTKEEFVH ILRRQSNGFS RGSSKYRGVT LHKCGRWEAR  360
MGQFLGKKYI YLGLFDNEIE AARAYDQAAI KCNGREAVTN FDPSVYQNEL LTEGNSSSFD  420
QNLDLSLGIS APTVLDTSVS GDNKIGGLKV KTSTDIVVEP DWKKARCAIS TPEDGSQQTQ  480
LEAPFPYGQL GQYVGLQNRE TVFSQGKQTP FTFLPQYQIH QPDSEKIQVK GNLTYNPLRL  540
LPNPKDDSIH LALEQQGLWS RVCPLSFPNY KLYSPTGGLQ GQGGSGLSPL LSSSIEHQPG  600
WPWKFYTNGS SASMLAAASS GFSPQAQTTL AHPSDWMHKL QGFQYPSGQS MGTQLSAPKP  660
SSQRQNLHST DPSSSGQVLG LSLSISTKSI AEPCSSKDND GSKFLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.137190.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLT50.0B8LLT5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-95AP2 family protein