PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000940
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 605aa    MW: 65471.9 Da    PI: 6.7446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073313PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-28110PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.9e-09414461455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Psi000940 414 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 461
                8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-17408479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-11408465No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16410478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.669410460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6414461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10416466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MGSDGKEEFG FSMNYKASGS PPSSNWQSAV ANVAMNNVQE SSLRVPTSSE SLSSSFFSLN  60
WEPLIEQSIP FQSSLSPMVS PSPPATSLPS DSIAIRELIG RLGGNICSVS GPLGSTMDTV  120
LNMGTAWNPL NSSPNLNLAV DPSKGALSIQ GPKHTPPHNL AQFSSDPGFA ERAARFSCFG  180
NRNYPELATP FNFPEGEPSY RSAPVDNSKI PRVQSNQSLK AGLPINLPNM AETKESNASE  240
TPHEGSEADP RFTDRKISRI SRSSTPVSTD DMKQRLATSG NESDEAEFST GREESSCSDQ  300
IAGREPGSKT LNEVNGRKRR VLSKAKAKDT PSAVASSGGR ETKSLEADES PTKRYKGAEV  360
GSNEKDDAKS KAEQSTILST GESSPKQTKD IVKTPEPPKD YIHVRARRGQ ATDSHSLAER  420
VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPRLDF  480
NMDGLIAKDM LQSHGSSPRM LFSTDPTAAF PQLHQPQQGP VQVGVTCGTE GHRMGHPVEG  540
ALRRTMNAQP PCIDGYGDSI PQVANVWDED LQSVVQMGFG QNRQSPFTSQ GFHGSVPTSH  600
MKIEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.97030.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848450.11e-177transcription factor bHLH78
TrEMBLB8LLM20.0B8LLM2_PICSI; Uncharacterized protein
STRINGERN100311e-176(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-67bHLH family protein