PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000968
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 590aa    MW: 65534.7 Da    PI: 7.692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073442PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-15044PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13427473455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Psi000968 427 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIQELQ 473
                799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-5451237IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.58423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-19426492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-15426477No hitNo description
PfamPF000106.2E-11427473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-19427488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-18429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGSEAAAASR FWNEEDKATV NSLLGPSAFE HLMMSYLSSE GLVSGINDCA LQQKLQNLVE  60
SSSFNWTYAI FWQLSRSKNG DVVLGWGDGS FKGPREGQEA DQARGFDQRF AETDQQLKKK  120
VLQKLQSFFG GGGEEDNNFV SGLDNVSDTE MFYLASMYYS FPRGIGVPGQ ALASGKNIWL  180
NEPSKLPTNM CSRAYLAKTG GIQTLVCLPM EHGVVEVGSV EMIRESKHAI DKIRSSFNEN  240
ACDGNRGQPT VKGSLVAPFS PNPIRVNAVN AKAAPPLKPS HDWKIFGQEL SKSSESVVTK  300
VEERDRHYHP VFRPPYSHAA PYVTNEQRIS YTNANQNGLQ SPNWSHISNG EGGEIYNTRD  360
LIKQSSRISP ISVAGPSLSA VTARPPLMES EEHSDVEASE RRPVVVEERR PRKRGRKPAN  420
GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAISYIQ ELQNKVKDME  480
TEKEKQQQPQ LQQAKSNIQD GRIVDPISDI DVQMMSGEAT VRVSCPKESH PVGRVMLALQ  540
RLQLDVHHAN ISAANENILH TFVIKLGGAQ VLTKDQLLEA ISGWSPRQKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-35462404195Transcription factor MYC3
4rqw_B2e-35462404195Transcription factor MYC3
4rs9_A2e-35462404195Transcription factor MYC3
4yz6_A2e-35462404195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400417RRPVVVEERRPRKRGRKP
2408416RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.32880.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLA60.0B8LLA6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-106bHLH family protein