PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001459
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 462aa    MW: 50135.6 Da    PI: 8.4276
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50823303PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-6436PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-105884127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C +++rtG C +G +C+F+H+p
  Psi001459 58 PGEPDCTYYMRTGLCGFGMSCRFNHPP 84
               5789*********************97 PP
2zf-CCCH38.91.4e-12104129227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG Ck+G++CkF+H++
  Psi001459 104 GQPECQYYLKTGSCKFGATCKFHHPR 129
                5799********************96 PP
3zf-CCCH39.97.2e-13151175327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C +++rtG+CkyG++CkF+H++
  Psi001459 151 EKECAYYMRTGQCKYGATCKFHHPQ 175
                679********************97 PP
4zf-CCCH314.2e-10321346227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++ +C+f+++tG Ck+G +C+++H++
  Psi001459 321 GQQECQFYMKTGDCKFGMTCRYHHPK 346
                6789********************96 PP
5zf-CCCH32.81.2e-10369392427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                + C ff r+G+Ck+G++CkF H++
  Psi001459 369 PACTFFTRYGICKFGATCKFDHPM 392
                78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.6E-55784IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6195785IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-85984IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-56285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-46383IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291102130IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10105129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5108129IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6148175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244148176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6149176IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5154174IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4319346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68319347IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7321346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5322348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4325346IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6365392IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864365393IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8368392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5369393IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MQGGFARQRG LVIDPDGWQQ HGRPRAEIAV VEEAMWQMSL QQQHENMEAE VGPFPERPGE  60
PDCTYYMRTG LCGFGMSCRF NHPPNRKQAA AAARNKGEYP ERLGQPECQY YLKTGSCKFG  120
ATCKFHHPRD KAGSTGRAVI NVYGYPLRPN EKECAYYMRT GQCKYGATCK FHHPQPVSTL  180
VPVRGSSLFT PVHSPTTPGP QPYPGSLPTW PMQRAPFIQS PRWQGPSSYA PLILPQGIMP  240
VPSWSTYPPG QVGSISSSDG QQQAMGAGLV YGPSSQTDPM ASGIQGTLSH FPPGSPGMGP  300
PTLQLPSSSA QRESMFPERP GQQECQFYMK TGDCKFGMTC RYHHPKERII PMPNCVLNSL  360
GLPLRPGAPA CTFFTRYGIC KFGATCKFDH PMGHSSYSQS ISSPIDISVG RHQIGSASAT  420
LSSVSLSSDL VVDSGGGKST EHSSTAEARQ QPSGVENLGP DA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.34260.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021620512.10.0zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-171ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLC0PR620.0C0PR62_PICSI; Uncharacterized protein
STRINGcassava4.1_007759m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-132zinc finger protein 1