PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001580
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 438aa    MW: 49137.2 Da    PI: 5.7587
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41646716PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-8619PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-093754092155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yps++++  LA+++gL+++q+ +WF N+R ++
  Psi001580 375 KWPYPSETDKVSLAESTGLDQKQINNWFINQRKRH 409
                679*****************************885 PP
2ELK35.81.8e-12329350122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK+qLlrKYsgy +sLkqEF+
  Psi001580 329 ELKDQLLRKYSGYFSSLKQEFL 350
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-20186230IPR005540KNOX1
PfamPF037904.9E-22187229IPR005540KNOX1
SMARTSM012565.0E-21235286IPR005541KNOX2
PfamPF037912.8E-21239284IPR005541KNOX2
PROSITE profilePS5121311.017329349IPR005539ELK domain
PfamPF037892.4E-10329350IPR005539ELK domain
SMARTSM011885.3E-7329350IPR005539ELK domain
PROSITE profilePS5007112.552349412IPR001356Homeobox domain
SuperFamilySSF466897.7E-19351423IPR009057Homeodomain-like
SMARTSM003891.2E-12351416IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-27354414IPR009057Homeodomain-like
CDDcd000861.32E-12361413No hitNo description
PfamPF059202.8E-17369408IPR008422Homeobox KN domain
PROSITE patternPS000270387410IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEDMNMNIGG AATFYGVNMN EYGDTGVGSM MALMTEQEPG NESIMSTMTM TIPSSAFSSY  60
SHAGQVEGLL SAAAATMFNQ GGHHHHQKHL VGGHFPPEQL VMNEQAAVIS DSSLSSVKTE  120
VCSNQLEFHR KTSGGGRSCC PQPSLVVRAP QQQQQHHHHQ EASRMVTSLE VDIDSACSSN  180
PNDSIDTLKT KIACHPHYPQ LLAAYMDCQK IGAPPEVVTV LDEISQENQL GRHLATMDIG  240
VDPELDQFME AYCQMLIKYH LELSKPFKEA RTFLNKMEAQ LNCLSKGAIR SFPSGYCDER  300
EDGGGSSEEE FSCGEIEVHE VDPRAEDREL KDQLLRKYSG YFSSLKQEFL KKKKKGKLPK  360
EARQKLLEWW NVHYKWPYPS ETDKVSLAES TGLDQKQINN WFINQRKRHW KPSEDMQFVV  420
MDSLNPHGAS FYMDGADC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.41910.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640348.11e-107homeobox protein knotted-1-like 2
SwissprotQ413301e-100KN1_SOLLC; Homeotic protein knotted-1
TrEMBLQ5SC620.0Q5SC62_PICMA; Homeobox transcription factor KN4
STRINGcassava4.1_010084m1e-104(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-91KNOTTED-like from Arabidopsis thaliana