PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001615
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 433aa    MW: 48716.6 Da    PI: 5.7652
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41647530PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-15476PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.5e-093633962255
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Psi001615 363 WPYPSETEKIALAECTGLDQKQINNWFINQRKRH 396
                58*****************************885 PP
2ELK38.82e-13316337122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK++Llr YsgyL+sLkqEF+
  Psi001615 316 ELKDHLLRRYSGYLSSLKQEFM 337
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.2E-19171215IPR005540KNOX1
PfamPF037903.5E-21172213IPR005540KNOX1
SMARTSM012568.0E-24219270IPR005541KNOX2
PfamPF037911.9E-22222268IPR005541KNOX2
SMARTSM011886.1E-8316337IPR005539ELK domain
PROSITE profilePS5121311.313316336IPR005539ELK domain
PfamPF037895.6E-11316337IPR005539ELK domain
PROSITE profilePS5007112.115336399IPR001356Homeobox domain
SMARTSM003892.6E-12338403IPR001356Homeobox domain
SuperFamilySSF466891.58E-18338413IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-27341401IPR009057Homeodomain-like
CDDcd000861.74E-11348400No hitNo description
PfamPF059203.0E-15356395IPR008422Homeobox KN domain
PROSITE patternPS000270374397IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEHLNTAAAQ ASSSLYGVGM AEYGDAGVSS MMALITQHEP HDSESIMSTR MPSSFSSFHG  60
HADCLLSAAM FQASQGDHKL KRQPGMDQLV SEQAGMSDSS MPSVKTEVCS GLRNQFEFHR  120
EQTGNCYTDQ SSNTPVNPLV TSLASQARGE AQMIPSLDAN SPHFNVDNEE YAIKSKILAH  180
PQYPSLLGAY IDCQKIGAPP EAVARLDALT REYQNQQRRT VSIGMDPELD QFMEAYCEIL  240
TKYHEELAKP FKEAMTFLMK IEAQFNSLGK GTIRISPPAE NDEKTEGGGS SEEVEDGSGG  300
ETDFQEVDHH AVEDRELKDH LLRRYSGYLS SLKQEFMKKK KKGKLPKDAR QKLLDWWSLH  360
DKWPYPSETE KIALAECTGL DQKQINNWFI NQRKRHWKPS EDMHFMVMNS HSPHSAALYV  420
ERHLMTEGYH LDC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.21090.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640348.11e-113homeobox protein knotted-1-like 2
SwissprotQ413301e-109KN1_SOLLC; Homeotic protein knotted-1
TrEMBLQ9ZR910.0Q9ZR91_PICMA; Homeobox transcription factor SKN1
STRINGVIT_18s0001g08380.t011e-111(Vitis vinifera)
STRINGcassava4.1_010084m1e-111(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-79KNOTTED-like from Arabidopsis thaliana