PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001736
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 418aa    MW: 47054.1 Da    PI: 5.174
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649311PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-15605PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.95.6e-321859102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   ++ed+ +++++sws+++nsfvv++++ f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i+r+k 
     Psi001736   1 MVEDPLTDTVVSWSSTNNSFVVWNSHLFSSDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKLIQRRKP 85 
                   89********************************************************999.........*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.5E-46183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-29183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.9E-33183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MVEDPLTDTV VSWSSTNNSF VVWNSHLFSS DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGQKHLLKLI QRRKPSCPPQ FIDNLHHHHQ QDQQQGMGAC VEVGQFGMVG  120
EIEGLRRDKS VLMLEVVKLR QQQQSTRNQL QTIGHRLQST EQRQQHMMTF LARAIQNPHF  180
SGTAVPEQAG QKRLATSKKR RRLPKGEAQQ DLPSFPASEG RIVKYQSSTS TPADSDHTQN  240
SSNLEAFLST MGHVDSPDMP TPHKTFQDRE QDESSSSISM IAEQLYGFEP GSAFDISMPV  300
DIPIETASAF DRNSVNLVGA EGEEDLDLEN VNDVFWEELL NEHFDSQDDS GTEAEANFPD  360
QDKGNFSSSS RSDVNLLAEQ MGLTAFHQSI PIIPEKLIAL ESGLVSHSNL KNPSISEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2118336129Heat shock factor protein 1
5d5v_B3e-2118336129Heat shock factor protein 1
5d5v_D3e-2118336129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198202KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.116320.0shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276853.11e-91PREDICTED: heat shock factor protein HSF8
RefseqXP_010276854.11e-91PREDICTED: heat shock factor protein HSF8
RefseqXP_010276855.11e-91PREDICTED: heat shock factor protein HSF8
RefseqXP_010276856.11e-91PREDICTED: heat shock factor protein HSF8
RefseqXP_010276857.11e-91PREDICTED: heat shock factor protein HSF8
RefseqXP_010276858.11e-91PREDICTED: heat shock factor protein HSF8
SwissprotQ84T614e-86HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA9NUX60.0A9NUX6_PICSI; Uncharacterized protein
STRINGXP_010276853.15e-91(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.29e-73heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]