PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001786
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 412aa    MW: 42895.7 Da    PI: 6.6971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S37594624PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-25442PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-06153175527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +Cr++     C+yG +C++ Hgp
  Psi001786 153 ECRRYKTDDGCPYGLNCRYKHGP 175
                6********************96 PP
2zf-CCCH18.82.9e-06191214225
                -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                kt++C+ f+ t  C+yG+ C+F+H
  Psi001786 191 KTKPCMKFFSTSGCPYGEGCHFSH 214
                9*********************** PP
3zf-CCCH30.75.2e-10256282127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC++f     C++Gd+C+FaHg+
  Psi001786 256 YKTRLCNRFNTEEGCRFGDKCHFAHGE 282
                9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2150175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.479153176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-5153178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5154179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-8188214IPR000571Zinc finger, CCCH-type
SMARTSM003560.77189216IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6189215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.882189217IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4191214IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4255282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-15255287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821255283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-9256286IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7256282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MESFEPMLKK PRGYDTDGSN GMTWTSSSSG GNINMNMNPG MNLSSGVNYQ SGPNPNQGHG  60
FNPNAAVANP NPNPNPNPGV NEVIPGPPQG GYLPAMGGGS YGGSYGGGSG GSYGGGSYGG  120
GSYENGNHSN HFEGLGFQQQ QRQGSNTNVG DLECRRYKTD DGCPYGLNCR YKHGPTDERD  180
FNIQISSSGS KTKPCMKFFS TSGCPYGEGC HFSHYFVGGI TAIGLAPVQT MPAATMAPPR  240
KQSGPSVDPS ATISGYKTRL CNRFNTEEGC RFGDKCHFAH GESDLRSLSN IRTSNRNGVP  300
MQSAPAMYDN GPPATVSNPA GFVDTTAYGN SASTNAYGNS AATTAYGSSA VYSANTFPSS  360
QSYAEPTPPG VAANTPFVAN YNMPVDNSSQ LAGIEGTMQG GPVTGTNNVQ VY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108121SGGSYGGGSYGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.18240.0needle
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247477.17e-62PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A0C9RL801e-113A0A0C9RL80_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12684_1767 transcribed RNA sequence
STRINGXP_010247477.13e-61(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-11C3H family protein