PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi001847

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 402aa MW: 44863.5 Da PI: 7.9497

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50822513	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-19632	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk++l+ m+vkgLtl+h+kSHLQkYRl Psi001847 48 KPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.463	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-32	46	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-17	48	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-10	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	144	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MEYPSNPGIV LNHGRAPSQP ERQHQQPALT GSSHYPCDPG VVVSADPKPR LRWTPELHER 60 FVDAVSQLGG PDKATPKSVL REMGVKGLTL YHLKSHLQKY RLGKQPHREV SVDRSNDGGS 120 SDGGHCLSRM ARDSSITPNH KEAMQIADAL RAQIEVQRRL HDQLEVQRRL QLRIEAQGKY 180 LQAILEKAQQ TLASEASTSA GIEATRAKLA DLASKLPTNS VRPNYSAMKV APLMDMHRQD 240 HRDLELKPHL RDRCSQNQFA SHDMEQSLNE SESPIEKKRC RKLFHESNGG NSPTKLRELG 300 LNASACKTEE EEDEEEEQLI KPTTVERPAA TRALVDERMA MLVQSNGLSL IQANHEPGLY 360 HPPSMLGNCR KVAEGLDLNR KGEGSVPQQG RELDLNAYGW GR

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MEYPSNPGIV LNHGRAPSQP ERQHQQPALT GSSHYPCDPG VVVSADPKPR LRWTPELHER  60
FVDAVSQLGG PDKATPKSVL REMGVKGLTL YHLKSHLQKY RLGKQPHREV SVDRSNDGGS  120
SDGGHCLSRM ARDSSITPNH KEAMQIADAL RAQIEVQRRL HDQLEVQRRL QLRIEAQGKY  180
LQAILEKAQQ TLASEASTSA GIEATRAKLA DLASKLPTNS VRPNYSAMKV APLMDMHRQD  240
HRDLELKPHL RDRCSQNQFA SHDMEQSLNE SESPIEKKRC RKLFHESNGG NSPTKLRELG  300
LNASACKTEE EEDEEEEQLI KPTTVERPAA TRALVDERMA MLVQSNGLSL IQANHEPGLY  360
HPPSMLGNCR KVAEGLDLNR KGEGSVPQQG RELDLNAYGW GR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-21	48	101	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-21	48	101	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-21	48	101	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-21	48	101	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-21	48	101	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-21	48	101	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-21	48	101	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-21	48	101	2	55	Protein PHOSPHATE STARVATION RESPONSE 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	EKKRCRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006369801.1	3e-70	protein PHR1-LIKE 3
Refseq	XP_024403235.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403236.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403237.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403238.1	1e-69	protein PHR1-LIKE 2-like isoform X1
Refseq	XP_024403239.1	1e-69	protein PHR1-LIKE 2-like isoform X1
TrEMBL	A0A3G6JCJ0	0.0	A0A3G6JCJ0_PINTA; Myb family transcription factor PHL3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-70	G2-like family protein