PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001862
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 400aa    MW: 44942.7 Da    PI: 4.2792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073381PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-27971PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l ++++ +G   W++ +++ g++R++k+c++rw++yl
        Psi001862 15 RGAWTAEEDTRLSEYIQSHGESGWRSLPKKAGLNRCGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding521.6e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+el+++ +++lG++ W++Ia +++ gRt++++k++w+++l
        Psi001862  68 RGNISPDEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9061062IPR017930Myb domain
SuperFamilySSF466897.7E-2813109IPR009057Homeodomain-like
SMARTSM007177.5E-121464IPR001005SANT/Myb domain
PfamPF002498.4E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-221669IPR009057Homeodomain-like
CDDcd001671.06E-81762No hitNo description
PROSITE profilePS5129426.45563117IPR017930Myb domain
SMARTSM007172.6E-1667115IPR001005SANT/Myb domain
PfamPF002498.3E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2570117IPR009057Homeodomain-like
CDDcd001672.60E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRTPCCSKR EELNRGAWTA EEDTRLSEYI QSHGESGWRS LPKKAGLNRC GKSCRLRWLN  60
YLRPDIKRGN ISPDEEELII RMHRLLGNRW SLIAGRLPGR TDNEIKNYWN THLSKKLTMS  120
SQNPKFPMQA PADPEQSASS DSSEDDVVRS AEYGVINHSG IGHLPAKIGG TSISARVPPP  180
VASDEVVIMK SWKQLLEDSL MNELDDSEDN SSLMGIELSN DMLESEAPLM EIQNNVSCSA  240
SDPNESVYSH GHLVADETSN QRTSESNVLY SQDCNVLSLP PTDHTLDFRI QDFSLESLLQ  300
PSVYNLEEIC PVQSQINGSD HVSCFALAAE QAMTDIYNNT LEPDWLTPVD YENQSSQPDQ  360
MDVLGNFFLS DENWQEEVPT SLSKIQEEEY RDILVDISNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.76810.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLG10.0B8LLG1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-62myb domain protein 7