PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001910
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 395aa    MW: 44127.7 Da    PI: 4.7625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073359PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-24625PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1041.9e-32551891128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                lp+G++F+P++e+l+ ++L++kv   +      ++ +   ++ev +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r +++ +W++tg++k+v
  Psi001910  55 LPAGVKFDPSEEQLL-RHLAAKVGIGNarphslINDFILtLEEVdGICYTHPENLP-GVKQDGSYSHFFHRTTKAYTTGTRKRRRIDKFRWHKTGSTKKV 152
                799************.99****988886666653333344999966**********.677888899********************************** PP

        NAM  93 lskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++ +ge++g+kk++ +   +++ +k+ekt+Wvmh+y+l
  Psi001910 153 YE-NGEQIGCKKIMGLEmtSAKGSKPEKTNWVMHQYHL 189
                **.999********9985555777788*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3540208IPR003441NAC domain
PROSITE profilePS5100529.44555208IPR003441NAC domain
PfamPF023652.1E-1256189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MARPWITNGR RIAMKIKNPT QIIENENGRN DANIACPNCN YQIDDSHVTQ EWPGLPAGVK  60
FDPSEEQLLR HLAAKVGIGN ARPHSLINDF ILTLEEVDGI CYTHPENLPG VKQDGSYSHF  120
FHRTTKAYTT GTRKRRRIDK FRWHKTGSTK KVYENGEQIG CKKIMGLEMT SAKGSKPEKT  180
NWVMHQYHLG TEDDEKEGEF VVSKIKYKTD SGIPQEDAGT SNGKGDPPTP TTSTPPQPPP  240
EKQYTYFDRI EEEHLFCASS PQAADLDATI HRPSKPNETE CDGQTYLPDA TSLWAGESQY  300
FEDSQEQMVG LFSCQEILEN QSCQENAEGT NNIPGLSDCG RIGGNTLGKE MHQSSYCDLE  360
NIDFDTPPDG PILDDSQFGS QESLSGWLNN FGDSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132136RKRRR
2133137KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627944.11e-110SUPPRESSOR OF GAMMA RESPONSE 1 isoform X4
TrEMBLB8LLI00.0B8LLI0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.14e-74NAC domain containing protein 44