PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001947
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 390aa    MW: 41441.5 Da    PI: 7.8699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649226PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-14094PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-1397141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar +  +Rt+ q+ s+ qky
        Psi001947  97 PWTEEEHRMFLLGLQKLGKGDWRGIARNFVITRTPTQVASHAQKY 141
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.274320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.29490146IPR017930Myb domain
SuperFamilySSF466894.04E-1792147IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-1993145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-1194140IPR009057Homeodomain-like
SMARTSM007172.2E-1194144IPR001005SANT/Myb domain
CDDcd001671.27E-997142No hitNo description
PfamPF002492.2E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTRKCSHCGN NGHNSRTCPN RGGVKLFGVR LTDGPIRKSA SMGNLMMMAS PSSPADPSEP  60
ASAAAAAAAA AADGYLSDGL VEASTSSNSR ERKKGVPWTE EEHRMFLLGL QKLGKGDWRG  120
IARNFVITRT PTQVASHAQK YFIRQSNMTR RKRRSSLFDM TPDPSATAVS VEDYSKVSSI  180
DPICDSSVQN QILPTGHTVC DSSSQNQILP TGHTVLDGSA QNQILPTSLS SAFNQGPLVE  240
SNNGAPLSSQ TASDQEFESN NSENTAEAET SFSQGVAAMA CGVPMVFPGF MAPLLPFPFP  300
MWPGFRPATT ELPPNSNIFK PRAEIPKAPM NIIDETGISK LSIGDPPGSI EPSGLSLKLL  360
NKSSRQSAFH TNPALSDSGF SSSSNAIHVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.2330.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626132.11e-104PREDICTED: transcription factor MYB1R1 isoform X2
TrEMBLA9NV600.0A9NV60_PICSI; Uncharacterized protein
STRINGXP_009626131.11e-103(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-72MYB_related family protein