PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi001960
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 389aa    MW: 43627.6 Da    PI: 4.9808
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41650537PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-20491PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-1872119148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd +lv+ ++++G g+W+ +++  g+ R++k+c++rw +yl
        Psi001960  72 KGPWTAEEDRKLVNFITMHGHGCWREVPKLAGLLRCGKSCRLRWTNYL 119
                      79******************************99************97 PP
2Myb_DNA-binding43.85.7e-14128168446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++ E++l++d+++  G++ W++Ia+ ++ gRt++++k++w++
        Psi001960 128 LSESEEKLIIDLHAAIGNR-WSRIAAQLP-GRTDNEIKNYWNT 168
                      5899***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2363121IPR009057Homeodomain-like
PROSITE profilePS5129423.93967123IPR017930Myb domain
SuperFamilySSF466892.55E-2869166IPR009057Homeodomain-like
SMARTSM007172.1E-1471121IPR001005SANT/Myb domain
PfamPF002491.6E-1572119IPR001005SANT/Myb domain
CDDcd001671.69E-1174119No hitNo description
Gene3DG3DSA:1.10.10.609.2E-24122174IPR009057Homeodomain-like
SMARTSM007177.6E-13124172IPR001005SANT/Myb domain
PROSITE profilePS5129418.671124174IPR017930Myb domain
PfamPF002491.4E-12128168IPR001005SANT/Myb domain
CDDcd001677.87E-10129168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
XRRGNFLPLS RPAGPYSISA GIFSTQRPAL EPLERSPNVE KSTILKRDSC LFSDPLGKMG  60
RQPCCDKVGL KKGPWTAEED RKLVNFITMH GHGCWREVPK LAGLLRCGKS CRLRWTNYLR  120
PDLKRGLLSE SEEKLIIDLH AAIGNRWSRI AAQLPGRTDN EIKNYWNTRI KKKLRQMGID  180
PVTHKPLSQM QMQSSPTQSL LLQENDEQQQ QQQQQNEPDQ NHSNGSAETL VLTAREPNDD  240
IEPLENFNME DSMQLFNVCS PTSVISLSGR TEEVDSDDSD QVSKSFGNGG HAQYIGRESS  300
GVKAECGLSV WDQMGGVLGD PLSDYNSQWN VDLESWTAGL DAHAASASAW IQQLPDCQWN  360
DFQGDFEICS KSCPETLQRL GPFLDDDEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27701745108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174RIKKKLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.55180.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NRI40.0A9NRI4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.13e-76myb domain protein 20