PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002221
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 361aa    MW: 39418.5 Da    PI: 8.0409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073345PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-30855PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-1386130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
        Psi002221  86 PWTEEEHRMFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 130
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.515518IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.44479135IPR017930Myb domain
SuperFamilySSF466891.12E-1781136IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1782134IPR006447Myb domain, plants
SMARTSM007174.5E-1083133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-1185129IPR009057Homeodomain-like
PfamPF002491.5E-1086130IPR001005SANT/Myb domain
CDDcd001675.77E-986131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSRSCSQCGH NGHNSRTCVG NAVMLFGVRL TDGPMRKSVS MNNLSNLSQY EHSDPAEDGA  60
EGFDGYVSDD LVHSSSNARE RKRGVPWTEE EHRMFLVGLQ KVGKGDWRGI SRNFVKTRTP  120
TQVASHAQKY FLRQSNMNRR RRRSSLFDIT TDTFLSLPVE EDLVPGTGNP LPFPSQLSLG  180
QSSSFPAPEA GNFAIPVTSF PVPLSHVVLP GLPVGKPHEL EKQQEFTPMD CSENPQSSPM  240
ALTSEAAMDA SVSHPNFMDV PPPPQYRIWN PALPFPSVEI SATAGSKLVK PIPIIPTPPL  300
KTAESTKKIA TSSQKPVMEP SPLSLKLSEQ SKRHSAFQSM TSLSSHEMES QGNLGNVISV  360
A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.1830.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272144.12e-87PREDICTED: transcription factor MYB1R1-like
TrEMBLB8LLJ20.0B8LLJ2_PICSI; Uncharacterized protein
STRINGXP_010272144.17e-87(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.26e-67MYB_related family protein