PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002241
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 360aa    MW: 41431.6 Da    PI: 4.7286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41648977PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-4731PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.11.8e-45291543128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkgelvg 101
                pGfrFhPt++elv +yLk+ v+g+ +++ ++i+ +d+y+++PwdL +  + +e+e++fF++rd++ ++   r+nr+t+sgyWkatg+d++v++ + + +g
  Psi002241  29 PGFRFHPTEQELVGFYLKRMVQGRLHNF-NFIPVLDLYRYDPWDLSSFSSLGEREMFFFVPRDERCQNnRGRPNRMTASGYWKATGSDRSVHDDNAKCIG 127
                9**********************99888.99**************966666999*********99986377**********************999**** PP

        NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                lkktLvfy+grap+g+ktdW+m+eyrl
  Psi002241 128 LKKTLVFYRGRAPRGQKTDWIMNEYRL 154
                *************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5127175IPR003441NAC domain
PROSITE profilePS5100550.40227175IPR003441NAC domain
PfamPF023657.9E-2529154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
DPHQKSFIHM KMEMNVGQRG FNEKPIELPG FRFHPTEQEL VGFYLKRMVQ GRLHNFNFIP  60
VLDLYRYDPW DLSSFSSLGE REMFFFVPRD ERCQNNRGRP NRMTASGYWK ATGSDRSVHD  120
DNAKCIGLKK TLVFYRGRAP RGQKTDWIMN EYRLPDYSDN DKLKKEVVLC RIYKKATPLK  180
WLEQQAMNQT EVTSTYEDLD CISQDSLPSP AKINDNKRVQ EAKSICVRDS DYVACDEFTT  240
EPSSSPRDNV TKSDITCCLG SAVDSDLMES TVCGGFIDPD FPVFVDDCER NEEFSSLMTM  300
LNSSSSSSSV ECCCWEPLLI PEMAEEPSLF QITKPSMDFR NEEAGSDGNW IYMDRISFSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-412917719167NO APICAL MERISTEM PROTEIN
1ut4_B1e-412917719167NO APICAL MERISTEM PROTEIN
1ut7_A1e-412917719167NO APICAL MERISTEM PROTEIN
1ut7_B1e-412917719167NO APICAL MERISTEM PROTEIN
3swm_A1e-412917722170NAC domain-containing protein 19
3swm_B1e-412917722170NAC domain-containing protein 19
3swm_C1e-412917722170NAC domain-containing protein 19
3swm_D1e-412917722170NAC domain-containing protein 19
3swp_A1e-412917722170NAC domain-containing protein 19
3swp_B1e-412917722170NAC domain-containing protein 19
3swp_C1e-412917722170NAC domain-containing protein 19
3swp_D1e-412917722170NAC domain-containing protein 19
4dul_A1e-412917719167NAC domain-containing protein 19
4dul_B1e-412917719167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.49750.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVV70.0A9NVV7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-67NAC domain containing protein 36