PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002312
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 354aa    MW: 40409.2 Da    PI: 5.917
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38771950PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-17653PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.2e-12344748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      Ed +l ++++ +G g W+ I+++ g++R++k+c++rw++yl
        Psi002312  3 KEDMILSEYIRIHGDGGWRNIPKKAGLKRCGKSCRLRWLNYL 44
                     599*************************************97 PP
2Myb_DNA-binding543.9e-175095148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ +++E+el+v+++++lG++ W++Ia +++ gRt++++k++w++++
        Psi002312 50 RGNISPDEEELIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHM 95
                     7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.934144IPR017930Myb domain
SuperFamilySSF466893.06E-24291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-19251IPR009057Homeodomain-like
SMARTSM007172.8E-4246IPR001005SANT/Myb domain
CDDcd001673.52E-7244No hitNo description
PfamPF002491.8E-10344IPR001005SANT/Myb domain
PROSITE profilePS5129426.5654599IPR017930Myb domain
SMARTSM007176.8E-164997IPR001005SANT/Myb domain
PfamPF002495.5E-155094IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-255299IPR009057Homeodomain-like
CDDcd001671.54E-115495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
XKKEDMILSE YIRIHGDGGW RNIPKKAGLK RCGKSCRLRW LNYLRPDIKR GNISPDEEEL  60
IVRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNTHMSKKLL SMNESQTKPL PDLKTRSKYP  120
SPLQNQVFKA NPVKITTVVR PSELVKPNGY TNRRSDEAFR LSNVMNSCKS RYHLPVNDSI  180
TESESKPIAF AKADNLVETE AAKSTISMPS LADQQSPQSN HFDAATLAES LLYLNELSSP  240
DSHLLSYPSN CSTDFGLEEF YGGPATFAAR TNEFEDMCCD QSNMERLNNF TVADKQEMEE  300
LFHNAQRLDW IHEVDDLQKS SPEQLSLLLL ESEDEWEERA TGKAVLENSE QLIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2029932128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9010.0A0A167V901_PICAB; Transcription factor MYB30
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-54myb domain protein 3