PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002490
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LFY
Protein Properties Length: 338aa    MW: 38816.2 Da    PI: 8.3783
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55422341PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-2903PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY502.91.6e-153132671386
    FLO_LFY  71 lGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll.....sedeetaldalsqeglseepvqeekeaagsgg 165
                +Gftv+tLv+m+++elddl+++l++i+r++llvGe+yGik+a+rae+rrl+e+e +++ + ++      + +e+ald+lsqegls e+ q  +    s++
  Psi002490   1 MGFTVNTLVNMTEQELDDLIRTLVDIYRVELLVGEKYGIKSAIRAEKRRLDEAERKRMEQLFVdvdgkRKIDENALDTLSQEGLSVEEPQGDNAIILSQN 100
                8***************************************************98655555555666543334669********88666555444333333 PP

    FLO_LFY 166 eglge..aelvaaee.kkseeekkkaskk.kqkrkkkkelkse....ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLye 257
                +++++   +l a  +     +++ +  ++        ++   +    + +  ++++ + +++sgedgeerqrehPfivtepge+argkknGLDYLfdLye
  Psi002490 101 NTSASfpLNLNAGMDpVLILQNSCHLGTTvSGLIGMPDS---NyggeQTKGCKKQKRRRSKDSGEDGEERQREHPFIVTEPGELARGKKNGLDYLFDLYE 197
                322220022222222122222222222221222222222...122225556666777777889************************************* PP

    FLO_LFY 258 qCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida 357
                qC++fLl+vq+iakerGekcPtkvtnqvfr+ak++ga yinkPkmrhYvhCYalhcLd e+sn+lrra+kergenvGawrqacy+plva+a+++gwdi++
  Psi002490 198 QCGKFLLDVQHIAKERGEKCPTKVTNQVFRHAKHSGAGYINKPKMRHYVHCYALHCLDVEQSNRLRRAYKERGENVGAWRQACYYPLVAMAKDNGWDIEG 297
                **************************************************************************************************** PP

    FLO_LFY 358 vfnahprLsiWYvPtkLrqLChlerskas 386
                vfn+h++L+iWYvPtkLrqLCh e+sk+s
  Psi002490 298 VFNKHEKLRIWYVPTKLRQLCHFEKSKQS 326
                **************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.4E-1281324IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGFTVNTLVN MTEQELDDLI RTLVDIYRVE LLVGEKYGIK SAIRAEKRRL DEAERKRMEQ  60
LFVDVDGKRK IDENALDTLS QEGLSVEEPQ GDNAIILSQN NTSASFPLNL NAGMDPVLIL  120
QNSCHLGTTV SGLIGMPDSN YGGEQTKGCK KQKRRRSKDS GEDGEERQRE HPFIVTEPGE  180
LARGKKNGLD YLFDLYEQCG KFLLDVQHIA KERGEKCPTK VTNQVFRHAK HSGAGYINKP  240
KMRHYVHCYA LHCLDVEQSN RLRRAYKERG ENVGAWRQAC YYPLVAMAKD NGWDIEGVFN  300
KHEKLRIWYV PTKLRQLCHF EKSKQSHLQN FPTTLMIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4bhk_A1e-981573262171FLORICAULA/LEAFY HOMOLOG 1
4bhk_B1e-981573262171FLORICAULA/LEAFY HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.48140.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in vegetative buds and male cones but not in female cones, vascular tissue, roots or secondary needles.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978027.11e-127floricaula/leafy-like protein FL1
SwissprotO041160.0FLL_PINRA; Floricaula/leafy-like protein
TrEMBLQ5UKZ10.0Q5UKZ1_PICAB; LEAFY-like protein
STRINGEFJ206841e-126(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-108floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Mellerowicz EJ,Horgan K,Walden A,Coker A,Walter C
    PRFLL--a Pinus radiata homologue of FLORICAULA and LEAFY is expressed in buds containing vegetative shoot and undifferentiated male cone primordia.
    Planta, 1998. 206(4): p. 619-29
    [PMID:9821691]