PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002563
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 333aa    MW: 36586 Da    PI: 7.8731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41650063PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-23738PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.3e-15160206455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Psi002563 160 VHNLSEKRRRNRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKKLQ 206
                6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-20153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-20153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.885156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-16159210No hitNo description
PfamPF000104.9E-13160206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAHKCLEPSF LVHNPVLWDD EDALNRNYNY NYYTDLWGGL PLSSSAATTA RTSAEDSRPE  60
VVAVSEALES DYGRLNNNNN NNVSADTQLS CETAATSSSG GSMSSPSNGN KVIKSSKKKV  120
LMGTKDIECQ SQKAQEDSGE NFKQCSTGTS SSKRSRAAEV HNLSEKRRRN RINEKMKALQ  180
NLIPNSNKTD KASMLDEAIE YLKKLQLQVQ MLSARSGIDI SSMRWLAQMP HLQIQQMPKA  240
CMTTDQHAGV SISMPVGSGL MNTNQGSEKR PLPLHDLYIS GALGNTAIPI NLSSARIDDH  300
QSCKMDRPQG HFTLPQLPTT TQEVHSALSL QEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292767.11e-43transcription factor bHLH23
TrEMBLA9NSU40.0A9NSU4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-33phytochrome interacting factor 3