PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002575
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 332aa    MW: 36865.6 Da    PI: 7.6572
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41653687PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-30560PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18191245256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq   Lee F++n+ ++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Psi002575 191 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTK 245
                778899***********************************************98 PP
2HD-ZIP_I/II123.31.2e-39191280191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq++lLEesF+e++ L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l
    Psi002575 191 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELR-AL 280
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.2E-934141IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.1E-18180248IPR009057Homeodomain-like
SuperFamilySSF466894.15E-18185248IPR009057Homeodomain-like
PROSITE profilePS5007117.491187247IPR001356Homeobox domain
SMARTSM003892.9E-16189251IPR001356Homeobox domain
CDDcd000868.47E-18191248No hitNo description
PfamPF000469.2E-16191245IPR001356Homeobox domain
PROSITE patternPS000270222245IPR017970Homeobox, conserved site
CDDcd146860.00982240279No hitNo description
PfamPF021839.0E-11247281IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.5E-26247290IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
XSPYILPLPF LSSSSVNFSL QIYMLMKQMG MDMEDCNTGL GLGMSIGLGI GLLREDLHSH  60
RHHVNGPPVQ LDLLPLAPGL PSRDLPWGKT SPGTDGERSA GESKATVPRR IDVNKLPASC  120
YYNEDAGTIN VSSPNSALSS FHVDSGGAIN AESSCYAMSV KRERDATDEL EADRACSRVS  180
DEEADQEGGT RKKLRLSKEQ SALLEESFKE NSSLNPKQKQ ALAKRLNLRP RQVEVWFQNR  240
RARTKLKQTE VDCEFLKRCC ESLTDENRRL QKELQELRAL KLASPLYMQM PAATLTMCPS  300
CERVVPAENS RPPPFTLAKP QFYPYTHSSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189195TRKKLRL
2239247RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.17050.0needle
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857289.14e-91PREDICTED: homeobox-leucine zipper protein HAT22-like
TrEMBLA9NKN40.0A9NKN4_PICSI; Uncharacterized protein
STRINGERN111208e-89(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-76HD-ZIP family protein