PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002609
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family DBB
Protein Properties Length: 329aa    MW: 36120.2 Da    PI: 6.4958
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073150PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-7274PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.2e-074185442
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 C+ +e+ e+++ C  ++  lC  C  + H        H++vpl
  Psi002609 41 VQCDVCENAEATFLCCADEAALCSVCDNKVHAAnklaskHQRVPL 85
               57*****************************66899999999986 PP
2zf-B_box31.73.2e-1091132237
   zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 
                + +kC+ ++ek   +fC +++ llC++C +++H +       H
  Psi002609  91 QSPKCDICQEKTGYFFCLEDRALLCRQCDVSIH-SlnnlvatH 132
                789******************************.434455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-133885IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8083885IPR000315B-box-type zinc finger
CDDcd000215.64E-84185No hitNo description
PfamPF006433.6E-64185IPR000315B-box-type zinc finger
SuperFamilySSF578457.33E-585125No hitNo description
PROSITE profilePS501199.42890137IPR000315B-box-type zinc finger
SMARTSM003362.2E-1590137IPR000315B-box-type zinc finger
PfamPF006431.2E-891133IPR000315B-box-type zinc finger
CDDcd000211.05E-993137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
XPGSPSQYFA QCQNIAEQIL GSKYNRTDIX VVVQKQMKMK VQCDVCENAE ATFLCCADEA  60
ALCSVCDNKV HAANKLASKH QRVPLINPSS QSPKCDICQE KTGYFFCLED RALLCRQCDV  120
SIHSLNNLVA THQRFLVTGV KVGLEPSNTI SSSTNTFAQS SDATHQKPQT LKNGPREVSA  180
TSHQGIQKGA GGGGMSRKGT VSEYFSELLP LLRMDEFLNL PELDNGYSFD EAGSSRADNS  240
NFVEEWTANS LSMEEVNAEN CLAQVPEMPS PPTASGLYWP RRVIQHPKEG KRREDLAIFG  300
IDDASLVPDI GCRSSPPDSP LSKRRRLHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286292PKEGKRR
2322326KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.39840.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LM300.0B8LM30_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-65light-regulated zinc finger protein 1