PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002683
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 323aa    MW: 35366.1 Da    PI: 10.0861
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41648579PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-24136PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.2e-1589174286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W+++ +l+Li+a  e+  +l+rg+lk+++W+ev++++     + +  ++ +qCk++++ l+k+yk ++     +   s++++p+f++++
  Psi002683  89 WSQSATLTLIDAWGERYLELNRGNLKQKHWKEVAEAVngrpGSNKQPKTDVQCKNRLDTLKKKYKVERSKIFAG---STTKWPLFTKMD 174
                *************************************86655556666778**************999988875...6778*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.3E-2488176No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDESNNARRH HHHGGGGTAE VVAGGNTGGG GGATNGLSLS LPLPLTMPGS SSAKLSASPP  60
PPPPPPPQPA GEPVEGDRVA APGGRDDIWS QSATLTLIDA WGERYLELNR GNLKQKHWKE  120
VAEAVNGRPG SNKQPKTDVQ CKNRLDTLKK KYKVERSKIF AGSTTKWPLF TKMDELIGPA  180
RKLHHHHPQP LPLPPPPPMR PRRHPIESSP NPLNTATSPD MTESCLNGFN GNPSSAKRRK  240
TVAVTVDNPD SSPLKELAGA ILKFGEVYER TEVVKHQQMI DLEKHRMEFA KDLELQRMQL  300
FVQTQLELAK IKHAKHGNTE HYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.88820.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531829.12e-77trihelix transcription factor ASIL2-like
TrEMBLA9NWZ60.0A9NWZ6_PICSI; Uncharacterized protein
STRINGEFJ278847e-73(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.13e-52sequence-specific DNA binding transcription factors