PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi002862

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YC

Protein Properties

Length: 309aa MW: 34875 Da PI: 6.8014

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41653895	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-2049	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.5	6.5e-56	73	176	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+filelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdivp Psi002862 73 QLQMFWAFQmqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTMRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 172 89**98866789********************************************************************************** PP NF-YC 98 rdel 101 rd+l Psi002862 173 RDDL 176 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.0E-36	52	167	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.5E-38	87	159	IPR009072	Histone-fold
Pfam	PF00808	4.6E-21	95	158	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDHHNHHQHH PSSSSGGAAP QGMSQGYPDG EAAPPTPVGM QGQAGQQQPQ PGLHQSGAQQ 60 AFHHHHMQQQ HQQLQMFWAF QMQEIEQVSD FKNHQLPLAR IKKIMKADED VRMISAEAPV 120 LFAKACEMFI LELTMRSWIH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDDLKEEG 180 LGLGFARGGV TPEGSFYYPP PSMPQSPHQQ GMMGPSSIMM GRPAPLQMDP SAMYMQQQQP 240 PRPYGMPPHP HQPMWQHPHH PHPHQQQMPD GQSYGHPHQQ QQHLPDGQSY GQHQMTDEHS 300 YGTPPRSAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	6e-56	81	173	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	151	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.5567	0.0	shoot

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582162.1	7e-78	nuclear transcription factor Y subunit C-1
Swissprot	Q9SMP0	7e-75	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A9NKD3	0.0	A9NKD3_PICSI; Uncharacterized protein
STRING	XP_002511172.1	3e-77	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	7e-63	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]