PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi003056

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

DBB

Protein Properties

Length: 295aa MW: 32599.9 Da PI: 5.3558

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41649082	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-3260	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.6	9.5e-07	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++ ++ fC ++ lC +C ++ H H++ Psi003056 4 QCDACQSADASVFCCADEAALCMKCDSKVHDAnklaskHRRL 45 7*****************************446777778765 PP
2	zf-B_box	30.6	6.9e-10	59	98	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +C+ ++e ++ +fC+ ++ lC+dC l++H+ H Psi003056 59 LRCDICQERRAFFFCQADRAVLCRDCDLSIHSAneltakH 98 69*****************************656666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.281	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.1E-9	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.86E-7	3	47	No hit	No description
Pfam	PF00643	2.4E-5	4	46	IPR000315	B-box-type zinc finger
SMART	SM00336	2.8E-16	56	103	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.267	56	103	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.7E-8	59	99	IPR000315	B-box-type zinc finger
CDD	cd00021	2.35E-11	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MKVQCDACQS ADASVFCCAD EAALCMKCDS KVHDANKLAS KHRRLSLLEP NSSSSTDSLR 60 CDICQERRAF FFCQADRAVL CRDCDLSIHS ANELTAKHNR FLVPGTRVSL KPMETLSCPE 120 KAVATVTKAL MPPAQRMPNH AQPSMDLPVE TVTSTSNSDF SQYLNEVEQF LTSASPERLD 180 WGGSSEGDAI GKYMDSDWAP NLGLLPEGFY GDSLAEVPHM PSPITDSGFC MYSRLGITMK 240 PKAKQQQQVQ QVPYFLPGFD TGDDNFTVPD IVFAPSAKRM RMSNTTLHDQ QLFTM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NVK4	0.0	A9NVK4_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	5e-45	salt tolerance homolog2