PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003152
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ZF-HD
Protein Properties Length: 288aa    MW: 31174.8 Da    PI: 8.8985
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073075PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-17881PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-3181136359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                   vrY+eC+kNhAa++G+ha+DGCgEfm+s g egta+alkC ACgCHRnFHR+eve 
    Psi003152  81 IVRYRECQKNHAANIGSHALDGCGEFMAS-GLEGTADALKCQACGCHRNFHRQEVEG 136
                  689*************************9.999********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.3E-2982134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-1982132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-2883134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.74984133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.55E-18216286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-31217287IPR009057Homeodomain-like
TIGRFAMsTIGR015654.8E-25225282IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDHHHSHHQI PVSISPVSFH DISRLQQNQI YHNPTSIVHE TGTGNNIHGN NNNAHVGQNG  60
NGDEVKPLVE KSKKAESVEK IVRYRECQKN HAANIGSHAL DGCGEFMASG LEGTADALKC  120
QACGCHRNFH RQEVEGEGGS GTSSLQDGWY LGAAGRSRVD KKRPLPGGGG VGVPLFSSPS  180
PPPTAVHASG PQMLMALSSA CTLGDPDLHE GLGGRGVGSS SSAMKKRFRT KFSQEQKEKM  240
HAFADQLGWR IQKHDEAAVH QFCNEAGVRR HVLKVWMHNN KNTLGKKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-272262831875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.122600.0needle| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024402412.13e-68zinc-finger homeodomain protein 1-like
SwissprotQ9SB614e-58ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLB8LM960.0B8LM96_PICSI; Uncharacterized protein
STRINGPP1S3_539V6.11e-67(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.15e-44zinc finger homeodomain 1
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]