PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003171
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Dof
Protein Properties Length: 287aa    MW: 31441.5 Da    PI: 7.7165
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41651609PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-4566PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1222.1e-383089362
     zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               +++lkcprCdstntkfCyynnysl+qPr+fCk+CrryWtkGG+lr vPvGgg+rkn k++
  Psi003171 30 QEILKCPRCDSTNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGSLRSVPVGGGCRKNSKRN 89
               6789****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027019.2E-333187IPR003851Zinc finger, Dof-type
ProDomPD0074789.0E-223378IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0683387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGVLEGTGDM MDSYPPRQLL DRRLKPQGDQ EILKCPRCDS TNTKFCYYNN YSLTQPRHFC  60
KTCRRYWTKG GSLRSVPVGG GCRKNSKRNN NSNNNGKRSN GEACSSTTGS DQLSPSLGGV  120
SNDCKYYNGD GEELIGINYV NSLRQVDHEA AFAGCSINSG VYGIQANDHQ SSQSFQPYHL  180
PTALQSLQGS LIQAPNGFNQ AANRGDLGLV QQQAAGAVSY DREAYHPYIN MSLDHSDGHS  240
RAPQQHKSNN IIENPPQGLV YEGGYWNGGV WPDLSAYGLS NINPNSM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.146140.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NNI10.0A9NNI1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.15e-29DNA binding with one finger 4.7