PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003409
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 270aa    MW: 29247.5 Da    PI: 8.0239
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50073801PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-12985PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.2e-07852244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g W+ e  + +  a +++  +   +W++Ia+ ++ g+++ ++k ++
        Psi003409  8 GDWSREQNKAFEMALAKHLEDtddRWEKIASAVP-GKSPAEVKRHY 52
                     68*****************99*************.**********9 PP
2Myb_DNA-binding21.45.7e-07121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + +++G+g  k    ++      Rt+ q+ s+ qky
        Psi003409 121 PWTEEEHRMFLLGLEKFGKGXLKE---HLKdfvISRTPTQVASHAQKY 165
                      7*******************5554...555555789999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.143256IPR017877Myb-like domain
SMARTSM007172.5E-8658IPR001005SANT/Myb domain
PfamPF002497.1E-6852IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-11863IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-5962IPR009057Homeodomain-like
CDDcd001675.66E-71052No hitNo description
PROSITE profilePS5129410.426113170IPR017930Myb domain
SuperFamilySSF466892.54E-15116171IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-14118168IPR006447Myb domain, plants
SMARTSM007170.0062118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5119164IPR009057Homeodomain-like
PfamPF002491.5E-5121165IPR001005SANT/Myb domain
CDDcd001673.66E-5121166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPANMSNGDW SREQNKAFEM ALAKHLEDTD DRWEKIASAV PGKSPAEVKR HYEILVEDIA  60
SIEAGRVPIP SYLDEVAEQA DDGTAKKGGT HSSAYANLPS ERNGTGKGTS KSDQERRKGI  120
PWTEEEHRMF LLGLEKFGKG XLKEHLKDFV ISRTPTQVAS HAQKYFIRLN SMNRDRRRSS  180
IHDITSVNGS DVSSPQGPIT GQGNQSSGSA GQPANHVSQP GIPSVYGATV GQPIAGPMVS  240
AVGTPVMLPP GHAPYVVPVA YPMPQPTMHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-2110721173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.43380.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923684.11e-106transcription factor MYBS1
SwissprotQ9FNN66e-81SRM1_ARATH; Transcription factor SRM1
TrEMBLB8LKB70.0B8LKB7_PICSI; Uncharacterized protein
STRINGGSMUA_Achr9P21870_0011e-104(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-67MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]