PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003666
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 253aa    MW: 28633.3 Da    PI: 5.4072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41650766PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-12823PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-0967109855
                HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 Er+RR+++N+a+ +Lr+++Pk +      K++K +i   A+ ++ +Lq
  Psi003666  67 SERKRRKKLNDALYTLRSVVPKiS------KMDKQSIIGDAISHVLDLQ 109
                6*********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.00559108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1464123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1165114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-1166113No hitNo description
PfamPF000101.7E-767109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-1367122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDTPVQYTIE ALKSDYYEDQ NNQLWMDNMD EIAGHFDWDD NDPEITGVSK PAAKTNHLQS  60
AFKNLHSERK RRKKLNDALY TLRSVVPKIS KMDKQSIIGD AISHVLDLQT KIQEIQGEIE  120
GLCSSNKGED HTQISPDMMK PNLEKRSTES GDAKKSVDNF KHGKVLEGKI VEICNEGKDG  180
IYHVRIECKK DAGVLVDLMR ALESFPLEIV NSNVVVSMNP FTTHSLYVRS LENVKADKLE  240
DMIRQTMTSD CSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774ERKRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPT71e-159B8LPT7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-22bHLH family protein