PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003709
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family E2F/DP
Protein Properties Length: 251aa    MW: 27319.6 Da    PI: 9.4085
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S26036093PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-18230PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP54.81.6e-17178250361
    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliek 61 
                +++L++++ k   + +k+e+ g++t+neva+eLv+e                d+kn+ RR+ D+lNVL+a+++i+k
  Psi003709 178 GRGLWQFSLK---VSQKVESkGRTTYNEVADELVAEyanldstlvspdrqqyDEKNIWRRVSDALNVLMAMEIISK 250
                689*****99...99999999******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-30172250IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-13176251IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.72E-12179250IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.5E-16179250IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
STRRATGPRS GIRNRRAAAQ SVFSTSPHNN NSLRKDIISE FREASIQKYG EGFGITQNGT  60
NTEGFGITQN GTNTNGMKVE ENKSTPQLGE GEYPSNATSG RCSGTSACAP RQSICVESGS  120
AGSPSRGSDA AIXNTFLKQS YCKGTAFDIH QEDLDSPETA GTRKRKRVPR VNGGEKGGRG  180
LWQFSLKVSQ KVESKGRTTY NEVADELVAE YANLDSTLVS PDRQQYDEKN IWRRVSDALN  240
VLMAMEIISK X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-23170250179PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.48050.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079068.12e-46LOW QUALITY PROTEIN: transcription factor-like protein DPB
SwissprotQ9FNY25e-37DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D6QZS22e-70A0A0D6QZS2_ARACU; Uncharacterized protein
STRINGERN041113e-43(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-39Transcription factor DP