PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003728
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 250aa    MW: 28182.3 Da    PI: 8.2813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42989276PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-22781PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036101123123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp C++ F++   L  H rtH
  Psi003728 101 HECPVCHRNFTSGQALGGHKRTH 123
                79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.17E-63155No hitNo description
PfamPF139124.1E-83354IPR007087Zinc finger, C2H2
SMARTSM00355983353IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.17E-696123No hitNo description
Gene3DG3DSA:3.30.160.602.9E-499124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.408101128IPR007087Zinc finger, C2H2
PfamPF139121.5E-11101124IPR007087Zinc finger, C2H2
SMARTSM003550.14101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
XKKPKRYDVA DADSPYGLEW EDGFKQEMMM RLYACKSCNK KFPSFQALGG HRASCQLKNL  60
PRQLVHNQNN GGFKEAASLY RPSVETYKQS LYTEIKKVRM HECPVCHRNF TSGQALGGHK  120
RTHSTPPATS TNTSTSLSNI EQQHLSAIRS TQELDLNMPA EDENDCIQVQ HSSAVSVNLG  180
GDFLDSTNWP PYDYKLISYK SSQPWWMESH QPGVVKEDEA DSQFRSNTGF VRGRDLGCKR  240
AGLPLITTVN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.67420.0shoot
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-17C2H2-like zinc finger protein