PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003774
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 248aa    MW: 27897.6 Da    PI: 7.788
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50823014PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-2426PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.91.7e-54871901101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw +q   +e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+ rtdifdflvdivp
  Psi003774  87 QLQAFWGNQmreVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIGRTDIFDFLVDIVP 186
                89******9777799************************************************************************************* PP

      NF-YC  98 rdel 101
                rde 
  Psi003774 187 RDEF 190
                *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-3283181IPR009072Histone-fold
PfamPF008083.3E-21109172IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.4E-37110187IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
EIHANNPQVS EVHRTLRKMV NWAESEIRIE XEKSRQSVIR RIGYLESKDQ QQPTIPALPQ  60
VGYGTNPYIA PPIGGPPHPQ LASYHQQLQA FWGNQMREVE QAQDFKTHSL PLARIKKIMK  120
ADEDVKMISA EAPVVFAKAC EMFILELTLR SWIHTEENKR RTLQKNDIAA AIGRTDIFDF  180
LVDIVPRDEF KDEGLVIPRA AGAVPFMGPG DNVPSYYYVA QQAPNMAAYA PPTQQMRSKA  240
PAPPHGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-5594187295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.86870.0needle| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775727.13e-71nuclear transcription factor Y subunit C-4-like
RefseqXP_008775728.13e-71nuclear transcription factor Y subunit C-4-like
RefseqXP_008775729.13e-71nuclear transcription factor Y subunit C-4-like
RefseqXP_026656552.13e-71nuclear transcription factor Y subunit C-4-like
RefseqXP_026656553.13e-71nuclear transcription factor Y subunit C-4-like
SwissprotQ8LCG75e-67NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA9NKR81e-147A9NKR8_PICSI; Uncharacterized protein
TrEMBLB2LSM21e-147B2LSM2_PICWI; HAP5B
STRINGXP_008775725.11e-70(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-69nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]