PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi003858

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LSD

Protein Properties

Length: 243aa MW: 25384.3 Da PI: 8.4338

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50822345	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-17405	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.7	7.8e-13	74	98	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP GAp+V+Ca+C++V Psi003858 74 CNGCRTLLVYPQGAPNVCCAVCNAV 98 ************************9 PP
2	zf-LSD1	41.3	2.6e-13	113	137	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+CrtlL+Y rGA+sV+C++C tV Psi003858 113 CGHCRTLLMYVRGATSVQCSCCTTV 137 ************************9 PP
3	zf-LSD1	37.6	3.7e-12	151	175	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C t+L YP+GApsV+Ca+C+ V Psi003858 151 CGNCFTTLVYPYGAPSVKCAVCHYV 175 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.9E-12	71	101	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-11	74	98	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.8E-13	110	139	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.6E-11	113	137	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.5E-9	148	178	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.4E-12	151	175	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MLSGGYSTRS DTTPVNNGSA NGPIGSAPPR INSIQNNNPG AVRPGWGTMP LRMNPYPPQP 60 MPLPPPNVQG QLVCNGCRTL LVYPQGAPNV CCAVCNAVTA VPPPGTEMAQ LICGHCRTLL 120 MYVRGATSVQ CSCCTTVNLA MEANQVAHVN CGNCFTTLVY PYGAPSVKCA VCHYVTSVGQ 180 ISNMRMPLPA QRPPAAATTA PASSSALPTR SQTQTVVVEN PMTVDERGKM VSNVAVGVTT 240 EKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.917	0.0	shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002988289.1	5e-84	protein LOL1
Swissprot	Q6ASS2	2e-66	LOL3_ORYSJ; Protein LOL3
TrEMBL	A9NTQ6	1e-173	A9NTQ6_PICSI; Uncharacterized protein
STRING	EFJ10708	2e-83	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-45	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]