PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003860
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 243aa    MW: 26534.7 Da    PI: 9.8205
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38844908PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-14227PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.8e-1578122347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
        Psi003860  78 PWTEEEHRLFLMGLNKYGKGDWRSISRNFVVSRTPTQVASHAQKY 122
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.704123IPR017884SANT domain
PROSITE profilePS5129419.571127IPR017930Myb domain
SuperFamilySSF466891.0E-1772127IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-1874125IPR006447Myb domain, plants
SMARTSM007171.2E-1275125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1275121IPR009057Homeodomain-like
PfamPF002492.0E-1278122IPR001005SANT/Myb domain
CDDcd001672.31E-1178123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XCVPGKTPAE VRRHYELLVE DVNVIEAGRV ALPDYSENSY TPPEWMSDQS GDLTKQQAVS  60
VKAPSAKASE QERKKGVPWT EEEHRLFLMG LNKYGKGDWR SISRNFVVSR TPTQVASHAQ  120
KYFLRLSSGN KEKKRSSIHD ITSVNGAEMK QPHLQQSSAI TNSPNPAAVS RSSSMMYPSS  180
LGGATMVNSM GSPTGGNHMM LPPHSLGQYS QKGIGGHSPG HIIPVSSLGM PQMGYPMQPT  240
MHN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.151170.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923684.13e-64transcription factor MYBS1
RefseqXP_024366442.15e-64transcription factor SRM1-like
RefseqXP_024366443.15e-64transcription factor SRM1-like
TrEMBLA0A0D6R2Q11e-119A0A0D6R2Q1_ARACU; Uncharacterized protein
STRINGPP1S256_11V6.12e-63(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-55MYB family protein