PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003866
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 243aa    MW: 28202.5 Da    PI: 5.6016
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41650717PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-129PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.2e-091732062255
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Psi003866 173 WPYPSETEKIALAECTGLDQKQINNWFINQRKRH 206
                58*****************************885 PP
2ELK43.18.4e-15126147122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK++LlrKYsgyL+sLkqEF+
  Psi003866 126 ELKDHLLRKYSGYLSSLKQEFM 147
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.6E-272980IPR005541KNOX2
PfamPF037914.0E-253278IPR005541KNOX2
PfamPF037899.1E-12126147IPR005539ELK domain
PROSITE profilePS5121311.575126146IPR005539ELK domain
SMARTSM011882.0E-8126147IPR005539ELK domain
PROSITE profilePS5007112.082146209IPR001356Homeobox domain
SuperFamilySSF466891.15E-19148222IPR009057Homeodomain-like
SMARTSM003894.8E-12148213IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27151212IPR009057Homeodomain-like
PfamPF059201.1E-16166205IPR008422Homeobox KN domain
CDDcd000865.17E-11172210No hitNo description
PROSITE patternPS000270184207IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XWMQIGAPPE VVARLDALTN EYENQQHRTT VSIGMDPELD QFMEAYCEML TKYHEELTKP  60
FKEAMSFLKK IEAQLNSLSK GTIRISPSAE NDEKTEGGAS SEEVEDGSGG ETDFQEVDHH  120
AVEDRELKDH LLRKYSGYLS SLKQEFMKKK KKGKLPKDAR QKLLDWWTVH YKWPYPSETE  180
KIALAECTGL DQKQINNWFI NQRKRHWKPS EDMQLMAMDG QSPHGATLYV ERHLMTEGYH  240
LDC
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285521.11e-102PREDICTED: homeobox protein knotted-1-like 2
RefseqXP_015572849.11e-102homeotic protein knotted-1
RefseqXP_021640348.11e-102homeobox protein knotted-1-like 2
SwissprotQ413303e-99KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA9NR060.0A9NR06_PICSI; Uncharacterized protein
TrEMBLQ9ZR901e-178Q9ZR90_PICMA; Homeobox transcription factor SKN2
TrEMBLQ9ZTC01e-178Q9ZTC0_PICAB; Homeobox protein
STRINGVIT_18s0001g08380.t011e-101(Vitis vinifera)
STRINGXP_002510027.11e-101(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.14e-87KNOTTED-like from Arabidopsis thaliana